View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4741_high_8 (Length: 399)

Name: NF4741_high_8
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4741_high_8
NF4741_high_8
[»] chr8 (5 HSPs)
chr8 (11-390)||(37686589-37686968)
chr8 (11-237)||(33220540-33220753)
chr8 (203-363)||(4640713-4640873)
chr8 (225-351)||(43635142-43635268)
chr8 (285-331)||(33800498-33800544)
[»] chr2 (10 HSPs)
chr2 (203-366)||(37891619-37891782)
chr2 (210-366)||(12967267-12967424)
chr2 (210-296)||(11713076-11713162)
chr2 (225-325)||(22496013-22496116)
chr2 (225-340)||(11712981-11713097)
chr2 (210-296)||(22495947-22496034)
chr2 (203-331)||(2154294-2154423)
chr2 (225-294)||(18394910-18394979)
chr2 (225-294)||(42121933-42122002)
chr2 (210-296)||(42121866-42121954)
[»] chr7 (9 HSPs)
chr7 (203-363)||(30362795-30362955)
chr7 (250-367)||(42548157-42548273)
chr7 (215-296)||(38790969-38791050)
chr7 (225-363)||(1537186-1537324)
chr7 (210-296)||(48211897-48211984)
chr7 (225-331)||(48211812-48211918)
chr7 (225-293)||(31826114-31826182)
chr7 (225-292)||(26502371-26502438)
chr7 (225-292)||(26590276-26590343)
[»] chr3 (12 HSPs)
chr3 (203-302)||(47068195-47068294)
chr3 (225-331)||(53824322-53824428)
chr3 (210-366)||(2325485-2325642)
chr3 (210-366)||(44833467-44833629)
chr3 (225-331)||(35485275-35485383)
chr3 (210-294)||(42387851-42387936)
chr3 (225-325)||(42947413-42947514)
chr3 (210-296)||(35485362-35485449)
chr3 (210-294)||(42993635-42993719)
chr3 (210-296)||(16967853-16967942)
chr3 (210-296)||(53824407-53824496)
chr3 (253-294)||(42947495-42947536)
[»] chr1 (5 HSPs)
chr1 (225-363)||(39650196-39650334)
chr1 (210-296)||(47485505-47485593)
chr1 (210-296)||(39650313-39650402)
chr1 (225-351)||(45690987-45691114)
chr1 (307-363)||(11821160-11821216)
[»] chr4 (15 HSPs)
chr4 (225-346)||(53265809-53265931)
chr4 (225-325)||(28796658-28796758)
chr4 (210-296)||(53265910-53265996)
chr4 (210-294)||(33161699-33161783)
chr4 (210-326)||(46813892-46814007)
chr4 (210-331)||(36174503-36174625)
chr4 (225-337)||(47043928-47044041)
chr4 (225-360)||(40312731-40312869)
chr4 (225-360)||(40322807-40322945)
chr4 (210-288)||(42099431-42099510)
chr4 (254-296)||(40312710-40312752)
chr4 (254-296)||(40322786-40322828)
chr4 (210-296)||(887073-887161)
chr4 (275-352)||(1228030-1228106)
chr4 (210-296)||(28796737-28796825)
[»] scaffold1455 (2 HSPs)
scaffold1455 (225-331)||(313-419)
scaffold1455 (225-296)||(263-334)
[»] chr6 (4 HSPs)
chr6 (225-331)||(14830424-14830530)
chr6 (225-312)||(16444320-16444407)
chr6 (225-364)||(14153353-14153492)
chr6 (210-296)||(14153471-14153558)
[»] chr5 (8 HSPs)
chr5 (225-331)||(1974188-1974294)
chr5 (254-351)||(19401967-19402065)
chr5 (225-331)||(40017292-40017398)
chr5 (225-330)||(3461524-3461629)
chr5 (238-296)||(19401921-19401979)
chr5 (221-296)||(40017237-40017313)
chr5 (210-296)||(1974273-1974360)
chr5 (210-296)||(3461457-3461545)
[»] scaffold0016 (1 HSPs)
scaffold0016 (219-365)||(69720-69866)


Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 37686968 - 37686589
Alignment:
Q  11 caaaggcaaaggtttctgttaaattggaattcaatagcatgtgagaaacaagagcagggtgattagattatcaaaagcatgggctgttacacaacaaccg 110  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37686968 caaaggcaaaggtttctgttaaatttgaattcaatagcatgtgagaaacaagagcagggtgattagattatcaaaagcatgggttgttacacaacaaccg 37686869  T
Q  111 attcaatagaacgtgaggaaggaagaaaggcagaaagaaactgggtttgaaggagaaatgttttttcttctcagcgtgagttaactgacgcggcgtaact 210  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| || |||    
T  37686868 attcaatagaatgtgaggaaggaagaaaggcagaaagaaactgggtttgaaggagaaatgttttttcttctcagcgtgagttaactcatgcggtgtgact 37686769  T
Q  211 taagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccatt 310  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37686768 taagtcacgctcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagtgcatgttaagttgcgcaaggccatt 37686669  T
Q  311 ttagacttttactttaggaataaacgaaacgatttgggtaaagaggagaattcttaccccatactatctagagcttttgc 390  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37686668 ttagacttttactttgggaatgaacgaaacgatttgggtaaagaggagaattcttaccccatactatctagagcttttgc 37686589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 33220540 - 33220753
Alignment:
Q  11 caaaggcaaaggtttctgttaaattggaattcaatagcatgtgagaaacaagagcagggtgattagattatcaaaagcatgggctgttacacaacaaccg 110  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||    
T  33220540 caaaggcaaaggtttctgatgaattggaattcaatagcatgtgagaaacaagagcagggtgattagattatcaaaagcat-------------acaaccg 33220626  T
Q  111 attcaatagaacgtgaggaaggaagaaaggcagaaagaaactgggtttgaaggagaaatgttttttcttctcagcgtgagttaactgacgcggcgtaact 210  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |||| |||    
T  33220627 attcaatagcatgtgaggaaggaagaaaggcagaaagaaactgggtttgaaggagaaatgttttttcttcccggcgtgagttaactcacgctgcgtgact 33220726  T
Q  211 taagtcacgttcataatacactagcgc 237  Q
    ||||||||| ||| |||||||||||||    
T  33220727 taagtcacgctcaaaatacactagcgc 33220753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 363
Target Start/End: Original strand, 4640713 - 4640873
Alignment:
Q  203 gcgtaacttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgca 302  Q
    |||| |||||||||||||| | ||||||||||||||||| |||||| | | |||| ||||||||| ||| |||||||||||||||||||||||||| | |    
T  4640713 gcgtgacttaagtcacgttaagaatacactagcgcatgttaagtcacgaagcgtggcttaacatatgtaaaaaatacactagcgcatgttaagttgtgta 4640812  T
Q  303 aggccattttagacttttactttaggaataaacgaaacgatttgggtaaagaggagaattc 363  Q
     || |||||||| |||||||||| | ||| | ||| ||  ||||||||| ||| |||||||    
T  4640813 ggggcattttagtcttttactttggaaatgagcgatacagtttgggtaatgagcagaattc 4640873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 225 - 351
Target Start/End: Complemental strand, 43635268 - 43635142
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 324  Q
    ||||||||||||||||| |||||| | | ||| |||||||||||||||||| ||||||||||||||||||  |||| | || || | ||||| |||||||    
T  43635268 aatacactagcgcatgttaagtcacgaagcgtaacttaacataagtacaaattacactagcgcatgttaacatgcgtacgggcaatatagacatttactt 43635169  T
Q  325 taggaataaacgaaacgatttgggtaa 351  Q
    ||| |||||||| ||| ||||| ||||    
T  43635168 tagaaataaacggaaccatttgagtaa 43635142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 33800498 - 33800544
Alignment:
Q  285 cgcatgttaagttgcgcaaggccattttagacttttactttaggaat 331  Q
    ||||||||||  ||||||||| |||||||||| ||||||||||||||    
T  33800498 cgcatgttaacatgcgcaagggcattttagacatttactttaggaat 33800544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 203 - 366
Target Start/End: Complemental strand, 37891782 - 37891619
Alignment:
Q  203 gcgtaacttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgca 302  Q
    |||| |||||||||||| |||||||||||||| |||||| |||||| | || ||||||||||||||||||||||||||||||| |||||||||||| |||    
T  37891782 gcgtgacttaagtcacgctcataatacactagtgcatgttaagtcacgtaatgtgacttaacataagtacaaaatacactagcacatgttaagttgtgca 37891683  T
Q  303 aggccattttagacttttactttaggaataaacgaaacgatttgggtaaagaggagaattctta 366  Q
     || ||||||||||||||| ||| ||||| |  |||| ||||||  ||||||| ||||||||||    
T  37891682 ggggcattttagacttttagtttgggaatgactgaaatgatttgaataaagagcagaattctta 37891619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 366
Target Start/End: Complemental strand, 12967424 - 12967267
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccat 309  Q
    |||| ||||||||| |||||||||||||| || |||||| | | |||||||||||||| ||||||||||||  ||||||||||||  |||| | ||  ||    
T  12967424 ttaactcacgttcagaatacactagcgcaagttaagtcacgtagcgtgacttaacataggtacaaaatacagcagcgcatgttaacatgcgtaggggtat 12967325  T
Q  310 tttagac-ttttactttaggaataaacgaaacgatttgggtaaagaggagaattctta 366  Q
    ||| ||| |||||||||  |||| | || ||| |||| ||||| ||| ||||||||||    
T  12967324 tttggactttttactttgagaatgagcggaaccatttaggtaatgagcagaattctta 12967267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 11713162 - 11713076
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagt 296  Q
    |||| ||||| ||| |||||||| | ||| || |||||| || |||||||||||| || ||||||||||||||||||||||||||||    
T  11713162 ttaactcacgctcagaatacacttgtgcaagttaagtcacgctacgtgacttaacttaggtacaaaatacactagcgcatgttaagt 11713076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 325
Target Start/End: Original strand, 22496013 - 22496116
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaa---tacactagcgcatgttaagttgcgcaaggccattttagactttta 321  Q
    ||||||||||||||||| |||||| | | |||||||||||||| ||| ||||   ||||||| ||||||||||  |||| |||| |||||||||| ||||    
T  22496013 aatacactagcgcatgttaagtcacgtagcgtgacttaacataggtaaaaaaaaatacactatcgcatgttaacatgcgtaagggcattttagacattta 22496112  T
Q  322 cttt 325  Q
    ||||    
T  22496113 cttt 22496116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 340
Target Start/End: Complemental strand, 11713097 - 11712981
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatac-actagcgcatgttaagttgcgcaaggccattttagacttttact 323  Q
    ||||||||||||||||| |||||| | | | |||||||||||||||||| | ||| |||||||||||||||  | || | || |||||| ||||||||||    
T  11713097 aatacactagcgcatgttaagtcacgtagcatgacttaacataagtacatattacaactagcgcatgttaacatacgtaggggcattttggacttttact 11712998  T
Q  324 ttaggaataaacgaaac 340  Q
    || ||||| | ||||||    
T  11712997 ttgggaatgagcgaaac 11712981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 22495947 - 22496034
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt-acaaaatacactagcgcatgttaagt 296  Q
    |||| ||||| ||| |||||||||||||| || |||||| || |||||||||||| || || | ||||||||||||||||||||||||    
T  22495947 ttaactcacgctcagaatacactagcgcaagttaagtcacgctacgtgacttaacttaggtaaaaaaatacactagcgcatgttaagt 22496034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 331
Target Start/End: Complemental strand, 2154423 - 2154294
Alignment:
Q  203 gcgtaacttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt-acaaaatacactagcgcatgttaagttgcgc 301  Q
    |||| |||||||||||| | | ||| |||||| |||||| |||||| | | |||||||||||||| || | |||||||||||  |||||||||||||||     
T  2154423 gcgtgacttaagtcacgctaagaatgcactagtgcatgttaagtcacgtagcgtgacttaacataggtaaaaaaatacactaatgcatgttaagttgcgt 2154324  T
Q  302 aaggccattttagacttttactttaggaat 331  Q
    | || ||||||   |||||||||| |||||    
T  2154323 agggacattttgatcttttactttgggaat 2154294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 18394910 - 18394979
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaa 294  Q
    ||||||||||||| ||| |||||| | | | |||||||||||| ||| ||||||||||||||||||||||    
T  18394910 aatacactagcgcgtgttaagtcacgtagcttgacttaacataggtaaaaaatacactagcgcatgttaa 18394979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 42121933 - 42122002
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaa 294  Q
    ||||||||||||||||| |||||| | |  ||||||||||||| ||| ||||||||||| ||||||||||    
T  42121933 aatacactagcgcatgttaagtcacgtagtgtgacttaacataggtaaaaaatacactaacgcatgttaa 42122002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 42121866 - 42121954
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaa--tacactagcgcatgttaagt 296  Q
    |||| ||||| ||| |||||||||||||| ||  |||||  | |||||||||||| || ||| ||||  ||||||||||||||||||||    
T  42121866 ttaactcacgctcagaatacactagcgcaagttcagtcacactacgtgacttaacttaggtaaaaaaaatacactagcgcatgttaagt 42121954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 203 - 363
Target Start/End: Original strand, 30362795 - 30362955
Alignment:
Q  203 gcgtaacttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgca 302  Q
    |||| |||||||||||| ||||||||||||||||||| | |||||| | |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  30362795 gcgtgacttaagtcacgctcataatacactagcgcatcttaagtcacgtaacgtgacttaacataagtacataatacactagcacatgttaagttgcgca 30362894  T
Q  303 aggccattttagacttttactttaggaataaacgaaacgatttgggtaaagaggagaattc 363  Q
     |  ||||||  |||||||||||| |||| | |||||||||||   ||||||| |||||||    
T  30362895 tgagcattttgaacttttactttaagaatgagcgaaacgatttaaataaagagcagaattc 30362955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 367
Target Start/End: Complemental strand, 42548273 - 42548157
Alignment:
Q  250 gcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactttaggaataaacgaaacgatttgggt 349  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||| | |  ||||| |||||||||||| ||||| | | |||||||||||||    
T  42548273 gcaacatgacttaacataagtacaaaatacgctagcgcatgttaagttgcgc-atgaaattttggacttttactttgggaatgagcaaaacgatttgggt 42548175  T
Q  350 aaagaggagaattcttac 367  Q
    || ||| |||||||||||    
T  42548174 aatgagcagaattcttac 42548157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 38791050 - 38790969
Alignment:
Q  215 tcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagt 296  Q
    ||||| ||| |||||||||||||| || |||||| || |||||||||||| || ||||||||||||||||||||||||||||    
T  38791050 tcacgctcagaatacactagcgcaagttaagtcacgctacgtgacttaacttaggtacaaaatacactagcgcatgttaagt 38790969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 363
Target Start/End: Original strand, 1537186 - 1537324
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 324  Q
    ||||||| |||| |||| |||| | | | |||||||||||||| ||| ||||||||||||||||||||||  |||||| || ||||||  || |||||||    
T  1537186 aatacaccagcgtatgttaagtaacgtagcgtgacttaacataggtaaaaaatacactagcgcatgttaacatgcgcaggggcattttgaacatttactt 1537285  T
Q  325 taggaataaacgaaacgatttgggtaaagaggagaattc 363  Q
    |  |||| ||||| ||  ||||||||| ||| |||||||    
T  1537286 tgagaatgaacgatactgtttgggtaatgagcagaattc 1537324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 48211984 - 48211897
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt-acaaaatacactagcgcatgttaagt 296  Q
    |||| ||||| ||| |||||||||||||| || ||||||| | |||||||||||| || || | ||||||||||||||||||||||||    
T  48211984 ttaactcacgctcagaatacactagcgcaagttaagtcatactacgtgacttaacttaggtaagaaaatacactagcgcatgttaagt 48211897  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 331
Target Start/End: Complemental strand, 48211918 - 48211812
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 324  Q
    ||||||||||||||||| |||||| | |||  |  |||||||||||| ||||||||||| | ||||||||  |||||| || ||||||| |  |||||||    
T  48211918 aatacactagcgcatgttaagtcacgtaacacggtttaacataagtaaaaaatacactaacacatgttaacatgcgcatggacattttaaaaatttactt 48211819  T
Q  325 taggaat 331  Q
    |||||||    
T  48211818 taggaat 48211812  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 31826114 - 31826182
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgtta 293  Q
    |||||||||||||| || |||||| || |||||||||||| ||  || ||||||||||||||| |||||    
T  31826114 aatacactagcgcaagttaagtcacgctacgtgacttaacttagataaaaaatacactagcgcttgtta 31826182  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 26502371 - 26502438
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgtt 292  Q
    |||||||| |||||||| ||| || | | ||||||||||||||| |||| | ||||||||||||||||    
T  26502371 aatacactggcgcatgttaagccacgtagcgtgacttaacataaatacagattacactagcgcatgtt 26502438  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 26590343 - 26590276
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgtt 292  Q
    |||||||| |||||||| ||| || | | ||||||||||||||| |||| | ||||||||||||||||    
T  26590343 aatacactggcgcatgttaagccacgtagcgtgacttaacataaatacagattacactagcgcatgtt 26590276  T

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Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 203 - 302
Target Start/End: Original strand, 47068195 - 47068294
Alignment:
Q  203 gcgtaacttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgca 302  Q
    |||| |||||||||||| ||||||||||||||||||||| |||||| |  ||||||||||||||||||||| |||||| ||||| |||||||||||||||    
T  47068195 gcgtgacttaagtcacgctcataatacactagcgcatgttaagtcacgttacgtgacttaacataagtacataatacattagcgtatgttaagttgcgca 47068294  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 331
Target Start/End: Complemental strand, 53824428 - 53824322
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 324  Q
    ||||||||||||||||| |||||| | | |||||||||||||| ||| ||| ||||||||||||||||||  |||||| || ||||| || | |||||||    
T  53824428 aatacactagcgcatgttaagtcacgtagcgtgacttaacataggtaaaaattacactagcgcatgttaacatgcgcatgggcatttcagtcatttactt 53824329  T
Q  325 taggaat 331  Q
    | |||||    
T  53824328 tgggaat 53824322  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 366
Target Start/End: Original strand, 2325485 - 2325642
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataag-tacaaaatacactagcgcatgttaagttgcgcaaggcca 308  Q
    |||| ||||| ||| |||||||||||||| || |||||| || | ||||| |||| | || |||||||||||||||||||||||||  |||| | || ||    
T  2325485 ttaactcacgctcaaaatacactagcgcaagttaagtcacgctatgtgacataactttaggtacaaaatacactagcgcatgttaacatgcgtagggaca 2325584  T
Q  309 ttttagacttttactttaggaataaacgaaacgatttgggtaaagaggagaattctta 366  Q
    ||||| ||||||||||| |||||  ||||||| |||| | ||| ||  ||||||||||    
T  2325585 ttttaaacttttactttgggaatggacgaaaccatttagataatgaccagaattctta 2325642  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 366
Target Start/End: Complemental strand, 44833629 - 44833467
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaac-----gtgacttaacataagtacaaaatac-actagcgcatgttaagttgcgcaa 303  Q
    |||| ||||| ||| |||||||||||||| || |||||| || ||     ||||||||||||||||| | | ||| |||||| ||||||||  |||| |     
T  44833629 ttaactcacgctcagaatacactagcgcaagttaagtcacgctacgtagggtgacttaacataagtatagattacaactagcacatgttaatatgcgtag 44833530  T
Q  304 ggccattttagacttttactttaggaataaacgaaacgatttgggtaaagaggagaattctta 366  Q
    || |||||| |||||||||||| | |||||||| ||| |||||||||| ||| ||||||||||    
T  44833529 gggcattttggacttttactttggaaataaacggaaccatttgggtaatgagcagaattctta 44833467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 331
Target Start/End: Complemental strand, 35485383 - 35485275
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt--acaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttac 322  Q
    ||||||||||||||||| |||||| | |||||||||||||||| ||  | |||||| |||||||||||||||  || ||| || ||||||| || |||||    
T  35485383 aatacactagcgcatgttaagtcacgtaacgtgacttaacataggtaaaaaaaatatactagcgcatgttaacatgtgcaggggcattttaaacatttac 35485284  T
Q  323 tttaggaat 331  Q
    |||| ||||    
T  35485283 tttaagaat 35485275  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 42387851 - 42387936
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt-acaaaatacactagcgcatgttaa 294  Q
    |||| ||||| ||| ||||||||||||||||| |||||| | | |||||||||||||| || | ||||||||||||||||||||||    
T  42387851 ttaactcacgctcagaatacactagcgcatgttaagtcacgtagcgtgacttaacataggtaaaaaaatacactagcgcatgttaa 42387936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 325
Target Start/End: Complemental strand, 42947514 - 42947413
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatac-actagcgcatgttaagttgcgcaaggccattttagacttttact 323  Q
    ||||||||||||||||| || ||| | | |||||||||||||||||||| | ||| |||||||||||||||  |||| | |  |||||| ||||||||||    
T  42947514 aatacactagcgcatgttaaatcaggtagcgtgacttaacataagtacatattacaactagcgcatgttaacatgcgtaggagcattttggacttttact 42947415  T
Q  324 tt 325  Q
    ||    
T  42947414 tt 42947413  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 35485449 - 35485362
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaa-tacactagcgcatgttaagt 296  Q
    |||| ||||| ||| |||||||||||||| || |||||| || |||| ||||||| || ||| |||| ||||||||||||||||||||    
T  35485449 ttaactcacgctcagaatacactagcgcaggttaagtcacgctacgtaacttaacttaggtaaaaaaatacactagcgcatgttaagt 35485362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 42993719 - 42993635
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaa 294  Q
    |||| ||||| ||| |||||||||| ||| || |||||| | | |||||||| ||||| ||  ||||||||||||||||||||||    
T  42993719 ttaactcacgctcagaatacactagtgcaagttaagtcacgtagcgtgactttacataggttaaaaatacactagcgcatgttaa 42993635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 16967853 - 16967942
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaa---tacactagcgcatgttaagt 296  Q
    |||| ||||| ||| ||||||||||||||  | |||||| || |||||||||||| || ||| ||||   ||||||||||||||||||||    
T  16967853 ttaactcacgctcagaatacactagcgcaaattaagtcacgctacgtgacttaacttaggtaaaaaaaaatacactagcgcatgttaagt 16967942  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 53824496 - 53824407
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaa---tacactagcgcatgttaagt 296  Q
    |||| ||||| ||| ||||||||||||||  | |||||| || |||||||||||| || ||| ||||   ||||||||||||||||||||    
T  53824496 ttaactcacgctcagaatacactagcgcaacttaagtcacgctacgtgacttaacttaggtaaaaaaaaatacactagcgcatgttaagt 53824407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 42947536 - 42947495
Alignment:
Q  253 acgtgacttaacataagtacaaaatacactagcgcatgttaa 294  Q
    |||||||||||| || ||| ||||||||||||||||||||||    
T  42947536 acgtgacttaacttaggtaaaaaatacactagcgcatgttaa 42947495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 225 - 363
Target Start/End: Complemental strand, 39650334 - 39650196
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 324  Q
    ||||||||||||||||| |||||| | | |||||||||||||| ||| ||||||||||||||||||||||  |||| | || |||||| ||| |||||||    
T  39650334 aatacactagcgcatgttaagtcacgtagcgtgacttaacataggtagaaaatacactagcgcatgttaacatgcgtaggggcattttggacatttactt 39650235  T
Q  325 taggaataaacgaaacgatttgggtaaagaggagaattc 363  Q
    ||||||| | |||||| |||| ||||| ||| |||||||    
T  39650234 taggaatgagcgaaaccatttaggtaatgagcagaattc 39650196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 47485593 - 47485505
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt--acaaaatacactagcgcatgttaagt 296  Q
    |||| ||||| ||| |||||||||||||| || |||||| || |||||||||||| || ||  | ||||||||||||||||||||||||    
T  47485593 ttaactcacgctcagaatacactagcgcaagttaagtcacgctacgtgacttaacttaggtaaaaaaaatacactagcgcatgttaagt 47485505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 39650402 - 39650313
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaa---tacactagcgcatgttaagt 296  Q
    |||| ||||| ||| |||||||||| ||| || |||||| || |||||||||||| || ||| ||||   ||||||||||||||||||||    
T  39650402 ttaactcacgctcagaatacactagagcaagttaagtcacgctacgtgacttaacttaggtaaaaaaaaatacactagcgcatgttaagt 39650313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 351
Target Start/End: Original strand, 45690987 - 45691114
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaataca-ctagcgcatgttaagttgcgcaaggccattttagacttttact 323  Q
    ||||||||||||||||| |||||| | | |  ||||||||||||||||| | || | ||||| ||||||||  || | | || |||||| ||||||||||    
T  45690987 aatacactagcgcatgttaagtcacgtagctagacttaacataagtacacattataactagctcatgttaacatgtgtaggggcattttggacttttact 45691086  T
Q  324 ttaggaataaacgaaacgatttgggtaa 351  Q
    || ||||| | |||||| ||||| ||||    
T  45691087 ttgggaatgagcgaaaccatttgagtaa 45691114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 11821216 - 11821160
Alignment:
Q  307 cattttagacttttactttaggaataaacgaaacgatttgggtaaagaggagaattc 363  Q
    |||||| |||||||||||| ||||| |||||||| |||||| ||| ||| |||||||    
T  11821216 cattttggacttttactttgggaatgaacgaaaccatttggataatgagcagaattc 11821160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 346
Target Start/End: Complemental strand, 53265931 - 53265809
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatac-actagcgcatgttaagttgcgcaaggccattttagacttttact 323  Q
    ||||||||||||||||| |||||| | | |||||||||||||||||||||| ||| |||||||||||||||  |||| | |  |||||| || |||||||    
T  53265931 aatacactagcgcatgttaagtcacgtagcgtgacttaacataagtacaaattacaactagcgcatgttaacatgcgtaggagcattttggaattttact 53265832  T
Q  324 ttaggaataaacgaaacgatttg 346  Q
    |||||||| | |||||| |||||    
T  53265831 ttaggaatgagcgaaaccatttg 53265809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 325
Target Start/End: Complemental strand, 28796758 - 28796658
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 324  Q
    ||||||||||||||||| |||||||| | ||||||||||||||  || ||||||||||||||| ||||||  ||| || || |||||| ||| |||||||    
T  28796758 aatacactagcgcatgttaagtcatgtagcgtgacttaacatagataaaaaatacactagcgcgtgttaacatgcacatggacattttggacatttactt 28796659  T
Q  325 t 325  Q
    |    
T  28796658 t 28796658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 53265996 - 53265910
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagt 296  Q
    |||| ||||| ||| || ||||||||||| || |||||| || |||||||||||| || ||| ||||||||||||||||||||||||    
T  53265996 ttaactcacgctcagaacacactagcgcaagttaagtcacgctacgtgacttaacttaggtataaaatacactagcgcatgttaagt 53265910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 33161783 - 33161699
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaa 294  Q
    |||| ||||| ||| ||||||||||||||||| ||||||   | |||||||||||||| ||| |||||||||||| |||||||||    
T  33161783 ttaactcacgctcagaatacactagcgcatgttaagtcacatagcgtgacttaacataggtaaaaaatacactagtgcatgttaa 33161699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 210 - 326
Target Start/End: Complemental strand, 46814007 - 46813892
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacata-agtacaaaatacactagcgcatgttaagttgcgcaaggcca 308  Q
    |||| ||||| ||||||| ||||||||||||| |||||||| | |||||||||||||| |  | ||||||||||| ||||||||||  |||| | || ||    
T  46814007 ttaactcacgctcataatgcactagcgcatgttaagtcatgtagcgtgacttaacatagataaaaaaatacactaacgcatgttaatatgcgtaggggca 46813908  T
Q  309 ttttagacttttacttta 326  Q
      ||||||||||||||||    
T  46813907 --ttagacttttacttta 46813892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 331
Target Start/End: Original strand, 36174503 - 36174625
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatac-actagcgcatgttaagttgcgcaaggcca 308  Q
    |||| ||||| ||| |||||||||||||| || |||||| | | |||||||||||||||||||| | ||| ||| |||||||||||  |||| |  | ||    
T  36174503 ttaactcacgctcagaatacactagcgcaagttaagtcacgtagcgtgacttaacataagtacatattacaactggcgcatgttaacatgcgtagtggca 36174602  T
Q  309 ttttagacttttactttaggaat 331  Q
    |||| || ||||||||| |||||    
T  36174603 ttttggatttttactttgggaat 36174625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 337
Target Start/End: Original strand, 47043928 - 47044041
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaa-tacactagcgcatgttaagttgcgcaaggccattttagacttttact 323  Q
    ||||||||||||||||| || ||| | | || ||||||||||| ||| |||| ||||||||| ||||||||  |||||| || ||||||  |  ||||||    
T  47043928 aatacactagcgcatgttaactcacgtagcgcgacttaacataggtaaaaaaatacactagcacatgttaacatgcgcaggggcattttgaatatttact 47044027  T
Q  324 ttaggaataaacga 337  Q
    |||||||| |||||    
T  47044028 ttaggaatgaacga 47044041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 360
Target Start/End: Original strand, 40312731 - 40312869
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtaca---aaatacactagcgcatgttaagttgcgcaaggccattttagactttta 321  Q
    |||| |||||||||||| |||||| | | |||||| |||||||||||||    | ||||||||||||||||||  | || |||   ||||||||||||||    
T  40312731 aatatactagcgcatgttaagtcacgtagcgtgacctaacataagtacatactattacactagcgcatgttaacatacgtaagagtattttagactttta 40312830  T
Q  322 ctttaggaataaacgaaacgatttgggtaaagaggagaa 360  Q
    |||| | ||| | |||||  |||||||||| ||| ||||    
T  40312831 ctttggaaatgagcgaaatcatttgggtaatgagcagaa 40312869  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 360
Target Start/End: Original strand, 40322807 - 40322945
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtaca---aaatacactagcgcatgttaagttgcgcaaggccattttagactttta 321  Q
    |||| |||||||||||| |||||| | | |||||| |||||||||||||    | ||||||||||||||||||  | || |||   ||||||||||||||    
T  40322807 aatatactagcgcatgttaagtcacgtagcgtgacctaacataagtacatactattacactagcgcatgttaacatacgtaagagtattttagactttta 40322906  T
Q  322 ctttaggaataaacgaaacgatttgggtaaagaggagaa 360  Q
    |||| | ||| | |||||  |||||||||| ||| ||||    
T  40322907 ctttggaaatgagcgaaatcatttgggtaatgagcagaa 40322945  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 42099431 - 42099510
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataag-tacaaaatacactagcgca 288  Q
    |||| ||||||||| ||||||||||||||  | |||||| || |||||||||||| || | || ||||||||||||||||    
T  42099431 ttaactcacgttcagaatacactagcgcaacttaagtcacgctacgtgacttaacttaggttaaaaaatacactagcgca 42099510  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 40312710 - 40312752
Alignment:
Q  254 cgtgacttaacataagtacaaaatacactagcgcatgttaagt 296  Q
    ||||||||||| || |||||||||| |||||||||||||||||    
T  40312710 cgtgacttaacttaggtacaaaatatactagcgcatgttaagt 40312752  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 40322786 - 40322828
Alignment:
Q  254 cgtgacttaacataagtacaaaatacactagcgcatgttaagt 296  Q
    ||||||||||| || |||||||||| |||||||||||||||||    
T  40322786 cgtgacttaacttaggtacaaaatatactagcgcatgttaagt 40322828  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 887073 - 887161
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt--acaaaatacactagcgcatgttaagt 296  Q
    |||| ||||| ||| |||| ||||||||| || |||||| || |||||||||||| || ||  | ||||| ||||||||||||||||||    
T  887073 ttaactcacgctcagaataaactagcgcaagttaagtcacgctacgtgacttaacttaggtaaaaaaaattcactagcgcatgttaagt 887161  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 1228030 - 1228106
Alignment:
Q  275 aatacactagcgcatgttaagttgcgcaaggccattttagacttttactttaggaataaacgaaacgatttgggtaaa 352  Q
    ||||||||||||||||||||||||||||  | |||||| ||  ||||| || ||||| | |||||| |||||||||||    
T  1228030 aatacactagcgcatgttaagttgcgcagaggcatttt-gaactttaccttgggaatgagcgaaacaatttgggtaaa 1228106  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 28796825 - 28796737
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt--acaaaatacactagcgcatgttaagt 296  Q
    |||| ||||| ||| || ||||||||||| || |||||| || |||||||||||| ||  |  | ||||||||||||||||||||||||    
T  28796825 ttaactcacgctcagaaaacactagcgcaagttaagtcacgctacgtgacttaacttagataaaaaaaatacactagcgcatgttaagt 28796737  T

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Target: scaffold1455 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 331
Target Start/End: Original strand, 313 - 419
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 324  Q
    ||||||| ||||||| | |||||| | | |||||||||||||||||||| | ||||||||||||||||||||   | |||| |||||| |||||||||||    
T  313 aatacaccagcgcatattaagtcacgtagcgtgacttaacataagtacagattacactagcgcatgttaagtcatgtaagggcattttggacttttactt 412  T
Q  325 taggaat 331  Q
    | |||||    
T  413 tgggaat 419  T

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Target: scaffold1455; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 263 - 334
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagt 296  Q
    |||||||||||||| || |||||| | | |||||||||||||| ||||||||||||| ||||||| ||||||    
T  263 aatacactagcgcaagttaagtcacgtagcgtgacttaacataggtacaaaatacaccagcgcatattaagt 334  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 331
Target Start/End: Complemental strand, 14830530 - 14830424
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 324  Q
    ||||||||||||||||| |||||| | | |||||||||||||| ||| ||||||||||||||||||||||  || | | || |||||| ||| |||||||    
T  14830530 aatacactagcgcatgttaagtcacgtagcgtgacttaacataggtaaaaaatacactagcgcatgttaacatgtgtagggacattttggacatttactt 14830431  T
Q  325 taggaat 331  Q
    | |||||    
T  14830430 tgggaat 14830424  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 16444407 - 16444320
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccatttt 312  Q
    |||||| |||||||||| |||||||| | ||| |||||||||| ||| ||||||||||||||||||||||  |||||| || ||||||    
T  16444407 aatacattagcgcatgttaagtcatgtagcgtaacttaacataggtaaaaaatacactagcgcatgttaacatgcgcaggggcatttt 16444320  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 364
Target Start/End: Complemental strand, 14153492 - 14153353
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 324  Q
    ||||||||||||||||| |||||| | | || |||| |||||| ||| ||||||||||||||||||||||  |||| | ||  ||||| | | |||||||    
T  14153492 aatacactagcgcatgttaagtcacgtagcgcgactaaacataggtaaaaaatacactagcgcatgttaacatgcgtaggggtattttggtcatttactt 14153393  T
Q  325 taggaataaacgaaacgatttgggtaaagaggagaattct 364  Q
    | ||||| | | |||  |||||||||| ||| ||||||||    
T  14153392 tgggaatgagcaaaatcatttgggtaatgagcagaattct 14153353  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 14153558 - 14153471
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt-acaaaatacactagcgcatgttaagt 296  Q
    |||| ||||| ||| | ||||||||||||  | |||||| || |||||||||| | ||||| | ||||||||||||||||||||||||    
T  14153558 ttaactcacgctcagactacactagcgcaacttaagtcacgctacgtgacttagcttaagttaaaaaatacactagcgcatgttaagt 14153471  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 331
Target Start/End: Complemental strand, 1974294 - 1974188
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 324  Q
    ||||||||||||||||| ||||||   || | ||||||||||| ||| ||||||||||||||||||||||  ||||||||  |||||| ||| |||||||    
T  1974294 aatacactagcgcatgttaagtcacataatgcgacttaacataggtaaaaaatacactagcgcatgttaacatgcgcaagagcattttggacatttactt 1974195  T
Q  325 taggaat 331  Q
    | |||||    
T  1974194 tgggaat 1974188  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 351
Target Start/End: Original strand, 19401967 - 19402065
Alignment:
Q  254 cgtgacttaacataagtacaaaataca-ctagcgcatgttaagttgcgcaaggccattttagacttttactttaggaataaacgaaacgatttgggtaa 351  Q
    |||||||||||||||||||||| |||| ||||||||||||||  |||| | || |||||| ||||||||||||  |||| |  ||||| ||||||||||    
T  19401967 cgtgacttaacataagtacaaattacaactagcgcatgttaacatgcgtatgggcattttggacttttactttgagaatgagtgaaaccatttgggtaa 19402065  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 331
Target Start/End: Original strand, 40017292 - 40017398
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 324  Q
    |||||||||||| || | |||||| | || |||||| |||||| ||| ||||||||||||| ||||||||  |||| |||| |||||||||| |||| ||    
T  40017292 aatacactagcgaattttaagtcacgtaatgtgactcaacataggtaaaaaatacactagcacatgttaacctgcgtaaggacattttagacatttattt 40017391  T
Q  325 taggaat 331  Q
    | |||||    
T  40017392 tgggaat 40017398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 330
Target Start/End: Original strand, 3461524 - 3461629
Alignment:
Q  225 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 324  Q
    |||||| ||||| |||| |||||| | |||||||||||||||| ||| ||||| ||||||| |||||||| || |||| ||  ||||||||| |||| ||    
T  3461524 aatacattagcgtatgttaagtcacgtaacgtgacttaacataggtaaaaaatgcactagcacatgttaacttacgcaggggtattttagacatttattt 3461623  T
Q  325 taggaa 330  Q
    | ||||    
T  3461624 tgggaa 3461629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 19401979 - 19401921
Alignment:
Q  238 atgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagt 296  Q
    |||| |||||| || |||||||||||| || |||||||||||||||||||| |||||||    
T  19401979 atgttaagtcacgctacgtgacttaacttaggtacaaaatacactagcgcaagttaagt 19401921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 40017237 - 40017313
Alignment:
Q  221 tcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt-acaaaatacactagcgcatgttaagt 296  Q
    |||||||||||||||||| || |||||| || |||||||||||| || || | |||||||||||||| || ||||||    
T  40017237 tcataatacactagcgcaagttaagtcacgctacgtgacttaacttaggtaaaaaaatacactagcgaattttaagt 40017313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 1974360 - 1974273
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacata-agtacaaaatacactagcgcatgttaagt 296  Q
    |||| ||||| ||| ||||||||||||||  | ||||||  | |||||||||||| || |  ||||||||||||||||||||||||||    
T  1974360 ttaactcacgctcagaatacactagcgcaacttaagtcacactacgtgacttaacttagacaacaaaatacactagcgcatgttaagt 1974273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 3461457 - 3461545
Alignment:
Q  210 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt--acaaaatacactagcgcatgttaagt 296  Q
    |||| ||||||||| ||||||||| |||| || |||||| || |||||||||||| || ||  | |||||||| ||||| |||||||||    
T  3461457 ttaactcacgttcagaatacactaacgcaagttaagtcacgctacgtgacttaacttaggtaaaaaaaatacattagcgtatgttaagt 3461545  T

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Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 365
Target Start/End: Complemental strand, 69866 - 69720
Alignment:
Q  219 gttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagactt 318  Q
    ||||| |||||||| ||||||||||||||| | | | ||| |||||||||||||| ||||||||| || |||||||  || | |||| |||||| |||||    
T  69866 gttcaaaatacacttgcgcatgtcaagtcacgtagcatgatttaacataagtacataatacactaacgtatgttaacatgtgtaagg-cattttggactt 69768  T
Q  319 ttactttaggaataaacgaaa-cgatttgggtaaagaggagaattctt 365  Q
    ||||||| | ||| | ||||| | ||||| |||||||| | |||||||    
T  69767 ttactttggtaatgagcgaaaccaatttgagtaaagagcaaaattctt 69720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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