View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4741_low_11 (Length: 339)
Name: NF4741_low_11
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 6 - 324
Target Start/End: Original strand, 46788597 - 46788911
Alignment:
| Q |
6 |
ttcttttcttttcttctcaattcaattgaaattccttctcgtgcagatactgctttaaggatttacaatggatcgatggatataattaaggtatgtaatt |
105 |
Q |
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| T |
46788597 |
ttcttttcttttcttctcaattcaattgaaattccttctcatgcagatactgctttaaggatttacaatggat----ggatataattaaggtatgtaatt |
46788692 |
T |
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| Q |
106 |
cagttatgggtccaattacaaagttttcagtttaggcactatttaaaactcacttaataattttgaaatttcatgagttagtaaacttaattatttttta |
205 |
Q |
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| T |
46788693 |
cagttatgggtccaattacaaagttttcagtttaggcactatttaaaactcacttaataattttgaaatttcatgagttagtaaacttaattatttttta |
46788792 |
T |
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| Q |
206 |
ttaaaagataaaatcaaaataaagagataaagttgatgctatcaattagacatttgttcataattcaaatttactttcgtatatatgagatgaatttttg |
305 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46788793 |
ttaaaatataaaatcaaaataaagagataaagttgatgctatcaattagacatttgttcataattcaaatttactttcgtatatatgagatgaatttttg |
46788892 |
T |
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| Q |
306 |
gattcttaagaaagattct |
324 |
Q |
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||||||||||||||||||| |
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| T |
46788893 |
gattcttaagaaagattct |
46788911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 46781214 - 46781287
Alignment:
| Q |
5 |
tttcttttcttttcttctcaattcaattgaaattccttctcgtgcagatactgctttaaggatttacaatggat |
78 |
Q |
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||||| |||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
46781214 |
tttctcttcttttcttctcaattcaagtgaaatttcttctcatgcagatactgctttaaggatttacaatggat |
46781287 |
T |
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