View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4741_low_12 (Length: 336)
Name: NF4741_low_12
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 53310989 - 53311264
Alignment:
| Q |
1 |
aaaaacatgaaatcaatcattcatttctctcttattcccacttttggtatgctttgtttgaatattttaaaacaactgacccagagtagaatgaaatgta |
100 |
Q |
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| T |
53310989 |
aaaaacatgaaatcaatcattcatttctctcttactccctcttttggtatgctttgtttgaat-----------------ccagagtagaatgaaatgta |
53311071 |
T |
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| Q |
101 |
attatcactctattttttggataggaaaatgcttaccataacaacaaatagtatcacgatcgaggagattacatacaatagaatcaatagcactgcacac |
200 |
Q |
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| T |
53311072 |
attatcactctattttttggacaggaaaatgcttaccataacaacaaatagtatcacga----ggagattacatacaatagaatcaatagcactgcacac |
53311167 |
T |
|
| Q |
201 |
ttgaaagtttgaccttaataacacccattccctccttcttttccagccataacaggttttaattggtgcaaattcatgagaaattcgggataaaaca |
297 |
Q |
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| T |
53311168 |
ttgaaagtttgaccttaataacacccattacctccttcttttccggccataacaggttttaattggtacaaattcatgagagattcgggataaaaca |
53311264 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 9009628 - 9009701
Alignment:
| Q |
194 |
tgcacacttgaaagtttgaccttaataacacccattccctccttcttttccagccataacaggttttaattggt |
267 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||| |||||| ||||||||| |||||| ||||| |
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| T |
9009628 |
tgcacacttgaaagtttgaccataataacacccacaacctccttgttttccggccataacaagttttacttggt |
9009701 |
T |
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