View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4741_low_15 (Length: 302)
Name: NF4741_low_15
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 85 - 287
Target Start/End: Complemental strand, 3015909 - 3015707
Alignment:
| Q |
85 |
catggttctgtgacttcttggtttacctgcatgaatagttcacttgaatatatgtatggcaacatgaaatgccttgaagaaaaaggcatcaacaaacaaa |
184 |
Q |
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| T |
3015909 |
catggttctgtgacttctttgtttacctgcatgaatagttcacttgaatatatgtatggcaacatgaaatgccttgaagaaaaaggcaccaacaaacaaa |
3015810 |
T |
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| Q |
185 |
ttcccattttctgctgctagctcatgcagcatgttccttgacatatcagaatgcataaaatctaatactctctaagattctttgtttaataacgatgatg |
284 |
Q |
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| T |
3015809 |
ttcccattttctgctgctagctcatgcagcatgttccttgacatttcagaatgcataaaatctaatactctctaagattctttgtttaataacgatgatg |
3015710 |
T |
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| Q |
285 |
atg |
287 |
Q |
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||| |
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| T |
3015709 |
atg |
3015707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 3015978 - 3015936
Alignment:
| Q |
16 |
gtttgaacttgttctcactattattacaattccatggaaatcc |
58 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3015978 |
gtttgaacttgttctcactattattacaattccatggagatcc |
3015936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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