View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4741_low_16 (Length: 283)
Name: NF4741_low_16
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741_low_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 15 - 283
Target Start/End: Original strand, 25884959 - 25885227
Alignment:
| Q |
15 |
caaaggaagtccaagaaaagttgcagttgcaaaggtaagaacagttacaactaatggtgcagcagacaaaactccaaagttaacagcaaaatagtacatg |
114 |
Q |
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| T |
25884959 |
caaaggaaatccaagaaaagttgcagttgcaaaggtaagaacagttacaactaatggtgcagcagacaaaactccaaagttaacagcaaaatagtacatg |
25885058 |
T |
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| Q |
115 |
aatttcccaatccatccatgctcggattcacgaaattgtttaatcttgttaccgaaatactcttcccaagcttgaaacttaatcacacgcatgttgttaa |
214 |
Q |
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| T |
25885059 |
aatttcccaatccatccatgctcggattcacgaaactgtttaatcttgttaccgaaatactcttcccaagcttgaaacttaatcacacgcatgttgttaa |
25885158 |
T |
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| Q |
215 |
gcaactcatttgtcgccttcatcctcgaatcgcgacttgtcatcatctgaaactgaaagttgttactac |
283 |
Q |
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| T |
25885159 |
gcaactcatttgtcgccttcatcctcgaatcgcgacttgtcatcatctgaaactgaaagttgttactac |
25885227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 14320277 - 14320531
Alignment:
| Q |
15 |
caaaggaagtccaagaaaagttgcagttgcaaaggtaagaacagttacaactaatggtgcagcagacaaaactccaaagttaacagcaaaatagtacatg |
114 |
Q |
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| T |
14320277 |
caaaggaattccaattaaagttgaagttccaaaggtaagaacagttacagctaatggggcagtacccaaaactcctatgttaactgcaaaatagtacaag |
14320376 |
T |
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| Q |
115 |
aatttcccaatccatccatgctcggattcacgaaattgtttaatcttgttaccgaaatactcttcccaagcttgaaacttaatcacacgcatgttgttaa |
214 |
Q |
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| T |
14320377 |
aatttcgcaatccatccatgctcagcttcgcgaaactgttgaattttgttaccaaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaa |
14320476 |
T |
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| Q |
215 |
gcaactcatttgtcgccttcatcctcgaatcgcgacttgtcatcatctgaaactg |
269 |
Q |
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| T |
14320477 |
gtaactcgtttgtcgccttcatcctcgaatcgcggctcgtcattatcttaaactg |
14320531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 14282143 - 14282385
Alignment:
| Q |
30 |
aaaagttgcagttgcaaaggtaagaacagttacaactaatggtgcagcagacaaaactccaaagttaacagcaaaatagtacatgaatttcccaatccat |
129 |
Q |
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| T |
14282143 |
aaaagttgcagttccaaaggtaagaacagctacagttattgaagcagtacccagaattcccatgttaactgcaaaatagtacaagaatttcccaatccat |
14282242 |
T |
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| Q |
130 |
ccatgctcggattcacgaaattgtttaatcttgttaccgaaatactcttcccaagcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcg |
229 |
Q |
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| T |
14282243 |
ccatgttcggcttcacgaaactgttgaatcttgttaccgaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcg |
14282342 |
T |
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| Q |
230 |
ccttcatcctcgaatcgcgacttgtcatcatctgaaactgaaa |
272 |
Q |
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| T |
14282343 |
ccttcagcctcgaatcacggctcctcattatctgaaactgaaa |
14282385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 14303901 - 14304143
Alignment:
| Q |
30 |
aaaagttgcagttgcaaaggtaagaacagttacaactaatggtgcagcagacaaaactccaaagttaacagcaaaatagtacatgaatttcccaatccat |
129 |
Q |
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| T |
14303901 |
aaaagttgcaactccaaatgtaagaacagttatagctaaaggagaagtagtcaaaactcccatgttcacagcaaaatagtacaagaatttcccaatccat |
14304000 |
T |
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| Q |
130 |
ccatgctcggattcacgaaattgtttaatcttgttaccgaaatactcttcccaagcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcg |
229 |
Q |
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| T |
14304001 |
ccatgttcggcttcacgaaactgttgaatcttgttcccgaagtactcttcccacgcttgaaatttaatcacacgcatgttgttaagcaactcattcgttg |
14304100 |
T |
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| Q |
230 |
ccttcatcctcgaatcgcgacttgtcatcatctgaaactgaaa |
272 |
Q |
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| T |
14304101 |
acttcattctcgaatcgcggctcatcattatccgaaactgaaa |
14304143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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