View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4741_low_20 (Length: 253)
Name: NF4741_low_20
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 1719441 - 1719659
Alignment:
| Q |
23 |
atgaattagaatgtaacttgttaagatagttaaattttgttaatgttaattagacaattagaaattagttaaagttaattactcaaatagttaatatagt |
122 |
Q |
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| T |
1719441 |
atgagttagaatgtaatttgttaagatagttaaattttgttaatgttagttagacaattagaaattagttaaagttagttactcaaataattaatatagt |
1719540 |
T |
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| Q |
123 |
tgaactcgataaataggagtgttgtttgtaaatattattctcttttataaatcaatataatttcttatgggctattacctcacaaatatatttatgtttt |
222 |
Q |
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||||||||||||||||||||||||||| || | |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1719541 |
tgaactcgataaataggagtgttgtttatacaaattattatcttttataaatcaatataatttcttatgggctattacctcataaatatatttatgtttt |
1719640 |
T |
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| Q |
223 |
ccttctctcctatgagtat |
241 |
Q |
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||||||||||||||||||| |
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| T |
1719641 |
ccttctctcctatgagtat |
1719659 |
T |
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