View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4741_low_3 (Length: 593)
Name: NF4741_low_3
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 35 - 574
Target Start/End: Original strand, 50212530 - 50213069
Alignment:
| Q |
35 |
gctacaaaacactaacacattagattgaagatgtattatttgttgtccaacatgcgtcaaactatgaaacaacatatcacggnnnnnnntactatggcac |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
50212530 |
gctacaaaacactaacacattagattgaagatgtattatttgttgtccaacatgcgtcaaactatgaaacaacatatcacggaaaaaaatactatggcac |
50212629 |
T |
|
| Q |
135 |
aacgctgacaaatgtaacattcaggctcagttcagcaaggtcaaaccgctagcttagtgtacaagtttgtactataaaagtatagtattttttgacacac |
234 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
50212630 |
aacgctgacaaatgttacattcaggctcagttcagcaaggtcaaaccgatagcttagtgtacaagtttgtactataaaagtatagtattttttgatacac |
50212729 |
T |
|
| Q |
235 |
tacttagagcagagttttaactaataaatagtgtcaatgtcattgaagaaaagagataaaagacgttatcgaaaaaagaatatacctccagtttttggaa |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50212730 |
tacttagagcagagttttaactaataaatagtgtcaatgtcattgaagaaaagagataaaagacgttatcgaaaaaagaatatacctccagtttttggaa |
50212829 |
T |
|
| Q |
335 |
atccgaaatggtaagtggttgcaaatagccgaggatcaatacagtaaacaggcaataaagtttgtgaggaaagccaagccttgtagagagtttcattatc |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50212830 |
atccgaaatggtaagtggttgcaaatagccgaggatcaatacagtaaacaggcaataaagtttgtgaggaaagccaagccttgtagagagtttcattatc |
50212929 |
T |
|
| Q |
435 |
caaaactctgagatcgtttctaaaccacacgattgctgtacctttaccactcctcttggtattgttggaagtgtacctttggaatgtttggtttgccaca |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50212930 |
caaaactctgagatcgtttctaaaccacacgattgctgtacctttaccactcctcttggtattgttggaagtgtacctttggaatgtttggtttgccaca |
50213029 |
T |
|
| Q |
535 |
cgttccatttcgttagaatctagctctggcacgtgttgca |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50213030 |
cgttccatttcgttagaatctagctctggcacgtgttgca |
50213069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University