View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4741_low_7 (Length: 416)
Name: NF4741_low_7
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 398
Target Start/End: Original strand, 11136677 - 11137063
Alignment:
| Q |
12 |
atcatcactacccctaagtgagtttttcttaccttttaaccttattttgattatgcttataagttgtttcttaatgtgattattattgttgtttttcgca |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11136677 |
atcatcactacccctaagtgagtttttcttaccttgtaaccttattttgattatgcttataagttctttcttaatgtgattattattgttgtttttcgca |
11136776 |
T |
|
| Q |
112 |
gtcctgtatttacacacatggctggaagctcttcggtgtggaaagcgctatcacctacagttctacaagctgctttcaatgtcgatccagaagttgagaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11136777 |
gtcctgtatttacacacatggctggaagctcttcggtgtggaaggcgctatcacctacagttctacaagctgctttcaatgtcgatccagaagttgagaa |
11136876 |
T |
|
| Q |
212 |
actcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattaaagtagaatggaattaagnnnnnnnnnnnnatggcaatgaaaataa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
11136877 |
actcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattgaagtagaatggaattaagtttttattttttatggcaatgaaaatat |
11136976 |
T |
|
| Q |
312 |
gttttaacaagccattatagacaatagtttttatctagtttataaagtttctgcacttttattttggatttataaggagttgattgc |
398 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11136977 |
gttttaacaagccgttatagacaatagtttttatctagtttataaagtttctgcacttttattttggatttataaggagttgattgc |
11137063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 80 - 399
Target Start/End: Complemental strand, 23258258 - 23257936
Alignment:
| Q |
80 |
tcttaatgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaagcgctatcacctacagttctacaa |
179 |
Q |
| |
|
||||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| || |
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|
| T |
23258258 |
tcttactgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactatcacctacagttctgcag |
23258160 |
T |
|
| Q |
180 |
gctgctttcaatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattaaagtagaatggaat |
279 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23258159 |
gctgctttcaatgttgatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaatggaaa |
23258060 |
T |
|
| Q |
280 |
taag----nnnnnnnnnnnnatggcaatgaaaataagttttaacaagccattatagacaatagtttttatctagtttataaagtttctgcacttttattt |
375 |
Q |
| |
|
|||| |||||| || ||||||| || || ||| | ||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
23258059 |
taagttttagttcttcttttatggcattggaaataagcttcaataagtcgttatagacagtagtttttatctactttataaagtttctgcacttttattt |
23257960 |
T |
|
| Q |
376 |
tggatttataaggagttgattgct |
399 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
23257959 |
tggatttatgaggagttgattgct |
23257936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 80 - 399
Target Start/End: Complemental strand, 23276136 - 23275814
Alignment:
| Q |
80 |
tcttaatgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaagcgctatcacctacagttctacaa |
179 |
Q |
| |
|
||||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| || |
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|
| T |
23276136 |
tcttactgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactatcacctacagttctgcag |
23276038 |
T |
|
| Q |
180 |
gctgctttcaatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattaaagtagaatggaat |
279 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23276037 |
gctgctttcaatgttgatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaatggaaa |
23275938 |
T |
|
| Q |
280 |
taag----nnnnnnnnnnnnatggcaatgaaaataagttttaacaagccattatagacaatagtttttatctagtttataaagtttctgcacttttattt |
375 |
Q |
| |
|
|||| |||||| || ||||||| || || ||| | ||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
23275937 |
taagttttagttcttcttttatggcattggaaataagcttcaataagtcgttatagacagtagtttttatctactttataaagtttctgcacttttattt |
23275838 |
T |
|
| Q |
376 |
tggatttataaggagttgattgct |
399 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
23275837 |
tggatttatgaggagttgattgct |
23275814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 81 - 283
Target Start/End: Complemental strand, 27542896 - 27542695
Alignment:
| Q |
81 |
cttaatgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaagcgctatcacctacagttctacaag |
180 |
Q |
| |
|
|||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||| || | |
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|
| T |
27542896 |
cttactgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcgctatcgcctacggttctgcagg |
27542798 |
T |
|
| Q |
181 |
ctgctttcaatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattaaagtagaatggaatt |
280 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27542797 |
ctgctttcaatgtagatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaatggaaat |
27542698 |
T |
|
| Q |
281 |
aag |
283 |
Q |
| |
|
||| |
|
|
| T |
27542697 |
aag |
27542695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 23268572 - 23268513
Alignment:
| Q |
224 |
aaagaggactgccgatgccattttcttccctcctccaaattaaagtagaatggaattaag |
283 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23268572 |
aaagaggaccgctgatgccattttcttccctcctccaaattaaagtagaatggaaataag |
23268513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 23258593 - 23258555
Alignment:
| Q |
12 |
atcatcactacccctaagtgagtttttcttaccttttaa |
50 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
23258593 |
atcatcactacccctaagtaagtttttcttaacttttaa |
23258555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 23276471 - 23276433
Alignment:
| Q |
12 |
atcatcactacccctaagtgagtttttcttaccttttaa |
50 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
23276471 |
atcatcactacccctaagtaagtttttcttaacttttaa |
23276433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 384
Target Start/End: Complemental strand, 27542632 - 27542603
Alignment:
| Q |
355 |
aaagtttctgcacttttattttggatttat |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27542632 |
aaagtttctgcacttttattttggatttat |
27542603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 27542996 - 27542963
Alignment:
| Q |
12 |
atcatcactacccctaagtgagtttttcttacct |
45 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
27542996 |
atcatcaccacccctaagtgagtttttcttacct |
27542963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 88 - 274
Target Start/End: Complemental strand, 8985467 - 8985282
Alignment:
| Q |
88 |
tgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaagcgctatcacctacagttctacaagctgcttt |
187 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| |||||| || ||||||| |
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|
| T |
8985467 |
tgattatgatttttgtttttt-cagtcctgtatttacacacatggctggaagttcttcggtgtggaaggccctatcacctagagttctgcagactgcttt |
8985369 |
T |
|
| Q |
188 |
caatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattaaagtagaat |
274 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8985368 |
caatgtagatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaat |
8985282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 398
Target Start/End: Complemental strand, 8984697 - 8984601
Alignment:
| Q |
306 |
aaataagttttaacaagccattatagacaatagtttttatctagtttataaagtttctgca----cttttattttggatttataaggagttgattgc |
398 |
Q |
| |
|
||||||| || || ||||| ||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||||| |||||||||||||| |
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|
| T |
8984697 |
aaataagcttcaataagccgttatagacaatagtttttatctactttatgaagtttctggaattttttttattttggatttaaaaggagttgattgc |
8984601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 8986077 - 8986042
Alignment:
| Q |
15 |
atcactacccctaagtgagtttttcttaccttttaa |
50 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8986077 |
atcactacccctaagtgagtttttcttaacttttaa |
8986042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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