View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4741_low_9 (Length: 395)
Name: NF4741_low_9
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 25885735 - 25885367
Alignment:
| Q |
18 |
ttatttaggtgtttttggaaacacatagctttcactggcttccttgcaatgattaggctttgtgttatgtatattggtccactgttgattcagagttttg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25885735 |
ttatttaggtgtttttggaaacacatagctttcactggcttccttgcaatgattaggctttgtgttatgtatattggtccactgttgattcagagttttg |
25885636 |
T |
|
| Q |
118 |
ttgatttcacatcaaggaaagatagtactactagtgaaggtattattttgatattgatcctttttgcagcaaaatcagttgaagtactgagtgttcatca |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25885635 |
ttgatttcacatcaaggaaagatagtactactagtgaaggtattattttgatattgatcctttttgcagcaaaatcagttgaagtgctgagtgttcatca |
25885536 |
T |
|
| Q |
218 |
atacaacttccactcgcagaaaatcggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaa |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25885535 |
atacaacttccactcgcagaaaatcggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaa |
25885436 |
T |
|
| Q |
318 |
gctcatggaacaggacagatagtgaatcacatggctgttgatgctcaacaactctcagatatgatgatg |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25885435 |
gctcatggaacaggacagatagtgaatcacatggctgttgatgctcaacaactctcagatatgatgatg |
25885367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 44349579 - 44349212
Alignment:
| Q |
18 |
ttatttaggtgtttttggaaacacatagctttcactggcttccttgcaatgattaggctttgtgttatgtatattggtccactgttgattcagagttttg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44349579 |
ttatttaggtgtttttggaaacacatagctatcactggcttccttgcagtgattaggctttgtgttatgtatattggtccactgttgattcagagttttg |
44349480 |
T |
|
| Q |
118 |
ttgatttcacatcaaggaaagatagtactactagtgaaggtattattttgatattgatcctttttgcagcaaaatcagttgaagtactgagtgttcatca |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44349479 |
ttgattttacatcaaggaaagatagtactactagtgaagatattattttgatattgatcctttttgcagcaaaatcagttgaagtactgagtg-tcatca |
44349381 |
T |
|
| Q |
218 |
atacaacttccactcgcagaaaatcggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || ||||||||||||||||||||| |
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| T |
44349380 |
atacaacttccactcgcagaaaatcggtatgcttattcgttcgagcataatcactttggtttacaaaaagggtctaagattgtcaagttcttcaagacaa |
44349281 |
T |
|
| Q |
318 |
gctcatggaacaggacagatagtgaatcacatggctgttgatgctcaacaactctcagatatgatgatg |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
44349280 |
gctcatggaacaggacagatagtgaatcacatgtctgttgatgctcaacaactctcagatatgatgatg |
44349212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 386
Target Start/End: Complemental strand, 14321050 - 14320685
Alignment:
| Q |
21 |
tttaggtgtttttggaaacacatagctttcactggcttccttgcaatgattaggctttgtgttatgtatattggtccactgttgattcagagttttgttg |
120 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||| ||||| | ||||||||||||||||||||| ||||||| |||||||||| |||||||||| |
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| T |
14321050 |
tttaggtgtttttggaaacaaatagctttcacgggcttcattgcagtcattaggctttgtgttatgtatgttggtcccttgttgattcaaagttttgttg |
14320951 |
T |
|
| Q |
121 |
atttcacatcaaggaaagatagtactactagtgaaggtattattttgatattgatcctttttgcagcaaaatcagttgaagtactgagtgttcatcaata |
220 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14320950 |
atttcacatcaaggaaagatagtacgactagtgaaggtattgttttgatatgtgtcctttttgcagcaaaatcagttgaagtacttagtgttcatcaatt |
14320851 |
T |
|
| Q |
221 |
caacttccactcgcagaaaatcggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaagct |
320 |
Q |
| |
|
||||||||||| || ||| |||||||||||||||||||||||||||| ||||| ||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
14320850 |
taacttccactctcaaaaactcggtatgcttattcgttcgagcataatcacttcagtttacaaaaagggtttaaggttgtcaagttcttcaagacaagct |
14320751 |
T |
|
| Q |
321 |
catggaacaggacagatagtgaatcacatggctgttgatgctcaacaactctcagatatgatgatg |
386 |
Q |
| |
|
|||||||| || || || || |||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
14320750 |
catggaactggccaaattgttaatcacatggctgttgatgctcaacagctctcagatttgatgatg |
14320685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 21 - 386
Target Start/End: Complemental strand, 14282901 - 14282536
Alignment:
| Q |
21 |
tttaggtgtttttggaaacacatagctttcactggcttccttgcaatgattaggctttgtgttatgtatattggtccactgttgattcagagttttgttg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||| |||| |||||||||||||||| ||||||| |||||||| |||||||||||| |
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| T |
14282901 |
tttaggtgtttttggaaacacatagcttttacgggcttccttgcaatcattaagctttgtgttatgtatgttggtcccttgttgattgagagttttgttg |
14282802 |
T |
|
| Q |
121 |
atttcacatcaaggaaagatagtactactagtgaaggtattattttgatattgatcctttttgcagcaaaatcagttgaagtactgagtgttcatcaata |
220 |
Q |
| |
|
|||||||||||||||||||| |||| | ||||||||||||| ||||||||| |||||||||||| ||||||||| |||||||||| ||| |||||| | |
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|
| T |
14282801 |
atttcacatcaaggaaagatggtacgagtagtgaaggtattgttttgatatcgatcctttttgcggcaaaatcacttgaagtacttagtagtcatcagtt |
14282702 |
T |
|
| Q |
221 |
caacttccactcgcagaaaatcggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaagct |
320 |
Q |
| |
|
|||||||||||| |||||| | ||||||||| |||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
14282701 |
caacttccactctcagaaacttggtatgcttgttcgttcgagcataatcacttcagtttacaaaaagggcttaaggttgtcaagttcttcaagacaagct |
14282602 |
T |
|
| Q |
321 |
catggaacaggacagatagtgaatcacatggctgttgatgctcaacaactctcagatatgatgatg |
386 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14282601 |
catggaactggacagattgtgaatcacatggctgttgatgctcaacaactctcagatttgatgatg |
14282536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 21 - 376
Target Start/End: Complemental strand, 14304659 - 14304304
Alignment:
| Q |
21 |
tttaggtgtttttggaaacacatagctttcactggcttccttgcaatgattaggctttgtgttatgtatattggtccactgttgattcagagttttgttg |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||| | || |||||||||||||||||| | |||||| || |||||||||||||||||| |
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| T |
14304659 |
tttaggtgtttttggaaacacatagttttcactggctttcttgcattcatgaggctttgtgttatgtatgtcggtccattgctgattcagagttttgttg |
14304560 |
T |
|
| Q |
121 |
atttcacatcaaggaaagatagtactactagtgaaggtattattttgatattgatcctttttgcagcaaaatcagttgaagtactgagtgttcatcaata |
220 |
Q |
| |
|
||||||||||| |||||||||| | ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
14304559 |
atttcacatcacagaaagatagtccgactagtgaaggtattgttttgatatgtgtcctttttgcagcaaaatctgttgaagtacttagtgttcatcaatt |
14304460 |
T |
|
| Q |
221 |
caacttccactcgcagaaaatcggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaagct |
320 |
Q |
| |
|
||||||||| || |||||| | ||||||||| |||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||| |
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|
| T |
14304459 |
caacttccattctcagaaactaggtatgcttgttcgctcgagcataatcacttcggtttacaaaaagggtttaaggttgtcaagttcttcaagacaggct |
14304360 |
T |
|
| Q |
321 |
catggaacaggacagatagtgaatcacatggctgttgatgctcaacaactctcaga |
376 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
14304359 |
catggaactggacagattgtgaatcacatggctgttgatgctcaacaactctcaga |
14304304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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