View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4742_high_6 (Length: 365)
Name: NF4742_high_6
Description: NF4742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4742_high_6 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 3 - 348
Target Start/End: Original strand, 11780310 - 11780656
Alignment:
| Q |
3 |
tcatcatgcaaccggg-aaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaa |
101 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| |
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| T |
11780310 |
tcatcatgcaatcggggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaacgctgtcaaacacgttatgtagtggaaagctgaaa |
11780409 |
T |
|
| Q |
102 |
gatgttgacgacaatgatgtcctaggcatagggaccgtcatatgagaagtaacaactgatgatgtagaattaacaaccggccccatgtgtgagctagcaa |
201 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| |
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| T |
11780410 |
gatgttgacgacaatgatgtcctgggcatagggaccgtcatatgagaagtaacaactgctgaagtagaattaacaaccgaccccatgtgtgagctagcaa |
11780509 |
T |
|
| Q |
202 |
taatggggtccggaatagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaac |
301 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| |
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| T |
11780510 |
taatagggtccggaatagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggaactctctgagaagtggtgactgtcgaagtaatcggaac |
11780609 |
T |
|
| Q |
302 |
cggaacccaagtccaagtacttccattggccgaagtggaagcccccc |
348 |
Q |
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| T |
11780610 |
cggaacctaagtccaagtacttccattggccgaagtggaagcccccc |
11780656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 17158744 - 17159082
Alignment:
| Q |
17 |
ggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaat |
116 |
Q |
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| T |
17158744 |
ggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatgtagtggaaagctgaaaggtgttgacgacaat |
17158843 |
T |
|
| Q |
117 |
gatgtcctaggcatagggaccgtcatatgagaagtaacaactgatgatgtagaattaacaaccggccccatgtgtgagctagcaataatggggtccggaa |
216 |
Q |
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|| ||| | ||||||||||| |||| |||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| | || |||||| |
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| T |
17158844 |
gacgtcttgggcatagggactgtcaactgagaagtaacaactgctgaagtagaagtaacaaccggccccatgtgtgagctagcaatagtacggaccggaa |
17158943 |
T |
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| Q |
217 |
tagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaaccggaacccaagtcca |
316 |
Q |
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|||||||||||| | |||| ||||||||||||| |||||||||| || |||||||| ||||| ||| ||| ||||||||||||||||||||||||||| | |
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| T |
17158944 |
tagcctgagaagacagagccagtgttgaaggggtagtagtaaccagaactctctgaaaagtggtgactgttgaagtaatcggaaccggaacccaagtcga |
17159043 |
T |
|
| Q |
317 |
agtacttccattggccgaagtggaagccccccatctgtg |
355 |
Q |
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||||| ||||||||| |||| |||||||||||| |||| |
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| T |
17159044 |
ggtactgccattggccaaagttgaagccccccatatgtg |
17159082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 12101867 - 12101531
Alignment:
| Q |
16 |
gggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
115 |
Q |
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|||||| ||||||||||||| | || ||| || | |||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12101867 |
gggaaataatttcaaacactcgtgttgcttgtggtagctcctcgctagaaatattgttaaacacgttatgtagtggaaagctgaaagatgttgacgacaa |
12101768 |
T |
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| Q |
116 |
tgatgtcctaggcatagggac-----cgtcatatgagaagtaacaactgatgatgtagaattaacaaccggccccatgtgtgagctagcaataatggggt |
210 |
Q |
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||| ||| ||||||||| || | |||| || |||||| |||||| ||| ||||| | |||||||| ||||||| |||||| || | ||| |
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| T |
12101767 |
tgacgtcataggcatagtgattccttcatcatctgtgaagtatcaactgttgaagtagagtgaacaaccgaccccatgggtgagcaagta------gggg |
12101674 |
T |
|
| Q |
211 |
ccggaatagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaaccggaaccca |
310 |
Q |
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||||||||||| |||||||| |||| |||||||||||||||| ||| ||| || ||||||||| |||| ||| | ||||||||||| ||| ||||||||| |
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| T |
12101673 |
ccggaatagccagagaaggctgagccagtgttgaaggggcagaagtgaccagaactctctgagtagtggtgactatcgaagtaatcagaatcggaaccca |
12101574 |
T |
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| Q |
311 |
agtccaagtacttccattggccgaagtggaagcc-ccccatct |
352 |
Q |
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|||||| ||||| |||||||| |||||||||||| |||||||| |
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| T |
12101573 |
agtccaggtactgccattggctgaagtggaagcctccccatct |
12101531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 239 - 348
Target Start/End: Complemental strand, 14977410 - 14977301
Alignment:
| Q |
239 |
tgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaaccggaacccaagtccaagtacttccattggccgaagtg |
338 |
Q |
| |
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||||| || ||||| |||||| ||| |||||||||| || | |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||| |
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| T |
14977410 |
tgttgcagaggcagaagtaactggaactctctgagaggtagtaattgtcgaagtaatcggaaccggaacccaagtacaagtactgccattggctgaagtg |
14977311 |
T |
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| Q |
339 |
gaagcccccc |
348 |
Q |
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| T |
14977310 |
gaagctcccc |
14977301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 14977595 - 14977470
Alignment:
| Q |
27 |
tcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaatgatgtcctag |
126 |
Q |
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|||| |||||| |||||| | ||| || |||||||||||| | ||||||| ||| || | ||| ||||| ||||||||||| ||||| || ||||| | |
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| T |
14977595 |
tcaatcactggtgtagcttctggcaacttctcactagaaatactatcaaacatgttgtgtaatgggaagctaaaagatgttgatgacaaagacgtcctgg |
14977496 |
T |
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| Q |
127 |
gcatagggaccgtcatatgagaagta |
152 |
Q |
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| T |
14977495 |
gcacagggaccatcatctgagaagta |
14977470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 11776668 - 11776713
Alignment:
| Q |
298 |
gaaccggaacccaagtccaagtacttccattggccgaagtggaagc |
343 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||||| ||||||| |
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| T |
11776668 |
gaaccggaacccacgtccaagcgcttccattggccgaaatggaagc |
11776713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 140467 - 140525
Alignment:
| Q |
288 |
gaagtaatcggaaccggaacccaagtccaagtacttccattggccgaagtggaagcccc |
346 |
Q |
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|||||||| |||||||| | |||||||||||||| ||||||||||||||| |||||||| |
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| T |
140467 |
gaagtaataggaaccgggaaccaagtccaagtacctccattggccgaagttgaagcccc |
140525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 19069624 - 19069709
Alignment:
| Q |
30 |
aacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
115 |
Q |
| |
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|||||||||||||| || ||||||||| | |||||| ||||||||| | || || | ||||||||||||||| |||||||||| |
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| T |
19069624 |
aacactggcgtagcacgtggcagctccttaggagaaattttgtcaaacgcattgtgtaatggaaagctgaaagagtttgacgacaa |
19069709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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