View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4743-Insertion-10 (Length: 165)

Name: NF4743-Insertion-10
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4743-Insertion-10
NF4743-Insertion-10
[»] chr8 (2 HSPs)
chr8 (71-165)||(1231839-1231933)
chr8 (12-72)||(1232005-1232065)
[»] chr5 (2 HSPs)
chr5 (71-165)||(21978396-21978490)
chr5 (12-67)||(21978553-21978608)
[»] chr2 (3 HSPs)
chr2 (71-165)||(24387665-24387759)
chr2 (12-68)||(24387835-24387891)
chr2 (86-143)||(10840767-10840823)
[»] chr3 (1 HSPs)
chr3 (95-155)||(6956496-6956555)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 2e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 1231839 - 1231933
Alignment:
Q  71 atatttttccagttgaatcttccagaaccaacctctatgaaacactcttgatgaattatcaaacccaacaaccttaaagattaacatatctcctc 165  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1231839 atatttttcctgttgaatcttccagaaccaacctctatgaaacactcttgatgaattatcaaacccaacaaccttaaagattaacatatctcctc 1231933  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 1232065 - 1232005
Alignment:
Q  12 gaaccaccaccaccacgatgttcacctggcagccacttgccatcatgatcgtcgtctccat 72  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1232065 gaaccaccaccaccacgatgttcacctgacagccacttgccatcatgatcgtcgtctccat 1232005  T

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Target: chr5 (Bit Score: 83; Significance: 1e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 21978396 - 21978490
Alignment:
Q  71 atatttttccagttgaatcttccagaaccaacctctatgaaacactcttgatgaattatcaaacccaacaaccttaaagattaacatatctcctc 165  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21978396 atatttttcctggtgaatcttccagaaccaacctctatgaaacactcttgatgaattatcaaacccaacaaccttaaagattaacatatatcctc 21978490  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 21978608 - 21978553
Alignment:
Q  12 gaaccaccaccaccacgatgttcacctggcagccacttgccatcatgatcgtcgtc 67  Q
    ||||||||||||||| ||||  |||||| |||||||||||||||||||||||||||    
T  21978608 gaaccaccaccaccatgatgaccacctgacagccacttgccatcatgatcgtcgtc 21978553  T

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Target: chr2 (Bit Score: 83; Significance: 1e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 24387665 - 24387759
Alignment:
Q  71 atatttttccagttgaatcttccagaaccaacctctatgaaacactcttgatgaattatcaaacccaacaaccttaaagattaacatatctcctc 165  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24387665 atatttttcctgttgaatcttcgagaaccaatctctatgaaacactcttgatgaattatcaaacccaacaaccttaaagattaacatatctcctc 24387759  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 24387891 - 24387835
Alignment:
Q  12 gaaccaccaccaccacgatgttcacctggcagccacttgccatcatgatcgtcgtct 68  Q
    ||||||||||||||||||| | |||||| || ||||||||| |||||||||||||||    
T  24387891 gaaccaccaccaccacgatatccacctgacatccacttgccctcatgatcgtcgtct 24387835  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 10840767 - 10840823
Alignment:
Q  86 aatcttccagaaccaacctctatgaaacactcttgatgaattatcaaacccaacaacc 143  Q
    |||||||||||||||||||| |||||||||||||| || |  ||||||||||||||||    
T  10840767 aatcttccagaaccaacctccatgaaacactcttgctg-agcatcaaacccaacaacc 10840823  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 6956496 - 6956555
Alignment:
Q  95 gaaccaacctctatgaaacactcttgatgaattatcaaacccaacaaccttaaagattaac 155  Q
    ||||||||||| |||||||||||||| || |  ||||||| ||||||||||||| ||||||    
T  6956496 gaaccaacctccatgaaacactcttgctg-agcatcaaacacaacaaccttaaaaattaac 6956555  T

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