View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4743-Insertion-2 (Length: 802)

Name: NF4743-Insertion-2
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4743-Insertion-2
NF4743-Insertion-2
[»] chr3 (8 HSPs)
chr3 (477-802)||(32996688-32997015)
chr3 (578-646)||(5354405-5354473)
chr3 (477-528)||(17227946-17227997)
chr3 (476-511)||(38742189-38742224)
chr3 (478-524)||(41755499-41755545)
chr3 (477-526)||(21812600-21812649)
chr3 (477-526)||(45242987-45243036)
chr3 (477-510)||(46721974-46722007)
[»] chr6 (12 HSPs)
chr6 (9-464)||(30820221-30820671)
chr6 (138-303)||(30815147-30815314)
chr6 (150-262)||(30811403-30811513)
chr6 (710-802)||(24549646-24549742)
chr6 (476-526)||(15083318-15083368)
chr6 (299-389)||(30815330-30815420)
chr6 (478-526)||(3543063-3543111)
chr6 (477-557)||(33078283-33078363)
chr6 (480-526)||(3542816-3542862)
chr6 (477-559)||(24551566-24551648)
chr6 (578-631)||(24551489-24551541)
chr6 (477-526)||(33480628-33480677)
[»] chr2 (4 HSPs)
chr2 (584-801)||(24741521-24741738)
chr2 (478-559)||(24741772-24741853)
chr2 (478-526)||(4479702-4479750)
chr2 (478-526)||(14573261-14573309)
[»] chr8 (7 HSPs)
chr8 (578-661)||(25876629-25876712)
chr8 (478-661)||(7424421-7424610)
chr8 (478-562)||(25876521-25876605)
chr8 (476-528)||(1365827-1365879)
chr8 (478-526)||(34992264-34992312)
chr8 (478-528)||(61454-61504)
chr8 (477-526)||(27918047-27918096)
[»] chr4 (11 HSPs)
chr4 (579-661)||(42544596-42544678)
chr4 (478-562)||(42544488-42544572)
chr4 (476-526)||(21165445-21165495)
chr4 (476-526)||(38694954-38695004)
chr4 (477-526)||(25371545-25371594)
chr4 (478-511)||(52757813-52757846)
chr4 (478-526)||(37275088-37275136)
chr4 (483-526)||(3847891-3847934)
chr4 (479-526)||(36864818-36864865)
chr4 (478-528)||(47198605-47198655)
chr4 (478-528)||(55160065-55160114)
[»] chr1 (3 HSPs)
chr1 (477-526)||(49610705-49610754)
chr1 (478-526)||(193850-193898)
chr1 (477-526)||(43737728-43737777)
[»] scaffold0041 (1 HSPs)
scaffold0041 (476-526)||(27575-27625)
[»] chr5 (1 HSPs)
chr5 (484-526)||(4607470-4607512)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 477 - 802
Target Start/End: Complemental strand, 32997015 - 32996688
Alignment:
Q  477 tggtgccatttaatttgggaaagaagacttttttctc-accatgagaaagtctctttaccaaggacacctgtcgattttgaacttgcnnnnnnnnnnnnn 575  Q
    ||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||||||||||| ||||| ||||||||||||                 
T  32997015 tggtgccatttaatttgagaaagaagacttttttttccaccatgggaaagtctctttaccaaggacacgtgtcggttttgaacttgcaaaaaaaaaaaaa 32996916  T
Q  576 nn-ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaaaacatgaaattat 674  Q
       |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32996915 aaactcagtttattattttaatgttatttccaagcttactactgcacctccccatttctccattacaccacaaaactgattgattaaaacatgaaattat 32996816  T
Q  675 attattcttcttctcacgtgcatcaaatatgaaaaaactcacaacataagaatacccagaaaaagcttaacatcaattgttcttcttctagcgtaaaata 774  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  32996815 attcttcttcttctcacgtgcatcaaatatgaaaaaactcacaacataagaatacccagaaaaagcttaacatcaactgttcttcttctcgcgtaaaata 32996716  T
Q  775 ctcagtttccaacaaagaaaatcaactc 802  Q
    ||||||||||||||||||| ||||||||    
T  32996715 ctcagtttccaacaaagaacatcaactc 32996688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 578 - 646
Target Start/End: Complemental strand, 5354473 - 5354405
Alignment:
Q  578 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccaca 646  Q
    |||||||||||||||||||||||| |  |||||||||  |||||||||| |||| | || |||||||||    
T  5354473 ctcaatttattattttaatgttgtgtttaagcttactgttgcacctccctatttcttcagtacaccaca 5354405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 528
Target Start/End: Complemental strand, 17227997 - 17227946
Alignment:
Q  477 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 528  Q
    ||||| ||||||||||||||||| |||||| |||| |||||||| |||||||    
T  17227997 tggtggcatttaatttgggaaaggagacttctttcccaccatgaaaaagtct 17227946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 476 - 511
Target Start/End: Complemental strand, 38742224 - 38742189
Alignment:
Q  476 ttggtgccatttaatttgggaaagaagacttttttc 511  Q
    ||||||||||||||| ||||||||||||||||||||    
T  38742224 ttggtgccatttaatctgggaaagaagacttttttc 38742189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 524
Target Start/End: Original strand, 41755499 - 41755545
Alignment:
Q  478 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaa 524  Q
    |||| ||||||||||||||||| ||| ||||||| ||||||||||||    
T  41755499 ggtgtcatttaatttgggaaaggagagttttttcccaccatgagaaa 41755545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 21812649 - 21812600
Alignment:
Q  477 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    ||||||| ||||||||||||||| |||||||||| ||| ||||| |||||    
T  21812649 tggtgccgtttaatttgggaaaggagacttttttttcatcatgaaaaagt 21812600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 45243036 - 45242987
Alignment:
Q  477 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    ||||||||||||||||||||||||||| || |||  ||||||| ||||||    
T  45243036 tggtgccatttaatttgggaaagaagagttcttttccaccatgggaaagt 45242987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 510
Target Start/End: Complemental strand, 46722007 - 46721974
Alignment:
Q  477 tggtgccatttaatttgggaaagaagactttttt 510  Q
    ||||| ||||||||||||||||||||||||||||    
T  46722007 tggtgtcatttaatttgggaaagaagactttttt 46721974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 174; Significance: 3e-93; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 9 - 464
Target Start/End: Original strand, 30820221 - 30820671
Alignment:
Q  9 gatatataccaata--cctttcgaaattgtttaatgtccatggctttggccacctaacttcaaatcaatcgagcaaacagggttgagagaagtttgatgg 106  Q
    ||||||||||||||  ||||||||||||||||| ||| ||||||  | |||||||||||||  |  ||| ||    ||||||||||||||||||||||||    
T  30820221 gatatataccaataatcctttcgaaattgtttactgttcatggccctagccacctaacttctgactaattgactgtacagggttgagagaagtttgatgg 30820320  T
Q  107 acagagacagaggatggtgaacatttccccg---atatgtgcatgatacatgattgtgatcaccaaacttcaaaataattgtctacacaagtctaattga 203  Q
     ||||| | | | || |||||||||||| |    | |||| ||| |||||||||| ||||||||| ||||||||||||  | |  |||||| ||||| ||    
T  30820321 ccagagtc-gtgaatcgtgaacatttcctcccaaacatgtccatcatacatgattttgatcaccatacttcaaaataaagggcc-cacaagcctaataga 30820418  T
Q  204 agtttgatgaccaaaatcaatgtatgacaaacatacttatcaaggttattagtgatatgccatgtattttattgtgggtcatggttgtgccaataatcac 303  Q
    ||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30820419 agtttgatgaccacaatcaatgtatgacaaacatacttagaaaggttattagtgatatgccatgtattttattgtgggtcatggctgtgccaataatcac 30820518  T
Q  304 ttatagttgaactccctatagatgccaaaattaaatgtttaaaagtaagtattacattttagtcgaatcgattaaatttaaattttgcatctcacttgat 403  Q
    || ||||       |||||  |||||||||||||| |||||||| |||   |||||||||||| |||| |||||||||| ||||||| |||||||||| |    
T  30820519 ttgtagt-------cctatccatgccaaaattaaacgtttaaaaataa-agttacattttagttgaatggattaaatttgaattttgtatctcacttgtt 30820610  T
Q  404 agcatcatgaaaaatgtacaacatggttggctccattggactatacattggtgggaaacca 464  Q
    ||||||||||||||| | |||||||||| | ||||||||||||||||| ||||||||||||    
T  30820611 agcatcatgaaaaatctccaacatggtttgttccattggactatacataggtgggaaacca 30820671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 138 - 303
Target Start/End: Original strand, 30815147 - 30815314
Alignment:
Q  138 atatgtgcatgatacatgattgtgatcaccaaacttcaaaataattgtctacacaagtctaattgaagtttgatgaccaaaatcaatgt-atgacaaaca 236  Q
    |||||| ||| |||||||||| ||||||||| |||||||||||| || ||  ||||| ||||| ||||||||||||||| ||||||||| |||||||| |    
T  30815147 atatgtccatcatacatgattttgatcaccatacttcaaaataaatggctt-acaagcctaatagaagtttgatgaccacaatcaatgttatgacaaaga 30815245  T
Q  237 tacttatcaaggttattagtgatatgccatgta--ttttattgtgggtcatggttgtgccaataatcac 303  Q
     ||||| ||||||||||||||||||| ||||||  |||| | ||||| | |||||||||||||||||||    
T  30815246 gacttagcaaggttattagtgatatgtcatgtattttttgtcgtgggccgtggttgtgccaataatcac 30815314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 150 - 262
Target Start/End: Original strand, 30811403 - 30811513
Alignment:
Q  150 tacatgattgtgatcaccaaacttcaaaataattgtctacacaagtctaattgaagtttgatgaccaaaatcaatgtatgacaaacatacttatcaaggt 249  Q
    |||||||||||||| ||||||||||||||||||   || |||||| ||||| ||||||||||||||||||| ||||  |||||||| |||||| ||||||    
T  30811403 tacatgattgtgattaccaaacttcaaaataataagctgcacaagcctaatagaagtttgatgaccaaaattaatg--tgacaaacttacttagcaaggt 30811500  T
Q  250 tattagtgatatg 262  Q
    |||||||||||||    
T  30811501 tattagtgatatg 30811513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 710 - 802
Target Start/End: Complemental strand, 24549742 - 24549646
Alignment:
Q  710 aactcacaacataagaatacccagaaaaa----gcttaacatcaattgttcttcttctagcgtaaaatactcagtttccaacaaagaaaatcaactc 802  Q
    ||||||||||||||||| |||||||||||    |||||||||||| | |||||||||| |||||   ||||||||||| ||||||||| ||||||||    
T  24549742 aactcacaacataagaaaacccagaaaaaaaaagcttaacatcaactattcttcttctcgcgtaccctactcagtttcgaacaaagaacatcaactc 24549646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 476 - 526
Target Start/End: Complemental strand, 15083368 - 15083318
Alignment:
Q  476 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    |||||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  15083368 ttggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 15083318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 299 - 389
Target Start/End: Original strand, 30815330 - 30815420
Alignment:
Q  299 atcacttatagttgaactccctatagatgccaaaattaaatgtttaaaagtaagtattacattttagtcgaatcgattaaatttaaatttt 389  Q
    ||||||||| || ||||| ||| | ||||| ||||||||| |||||||| | | | ||| |||||||| ||||| ||||||||||||||||    
T  30815330 atcacttattgtggaacttcctgttgatgcaaaaattaaaggtttaaaattgaatgttatattttagttgaatccattaaatttaaatttt 30815420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 478 - 526
Target Start/End: Complemental strand, 3543111 - 3543063
Alignment:
Q  478 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 3543063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 477 - 557
Target Start/End: Complemental strand, 33078363 - 33078283
Alignment:
Q  477 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaa 557  Q
    ||||||| |||||||||| |||  |||||||||| | |||||| || |||| ||||||| ||||||||||||  |||||||    
T  33078363 tggtgccgtttaatttggaaaatgagactttttttttaccatgggacagtccctttacccaggacacctgtcagttttgaa 33078283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 526
Target Start/End: Original strand, 3542816 - 3542862
Alignment:
Q  480 tgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    |||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  3542816 tgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 3542862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 477 - 559
Target Start/End: Complemental strand, 24551648 - 24551566
Alignment:
Q  477 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaact 559  Q
    ||||||| ||||||||| |||   ||||||||||  ||| |||| |||||  ||||||| |||||| ||||||||||||||||    
T  24551648 tggtgccgtttaatttgagaattgagactttttttccactatgaaaaagtacctttacccaggacatctgtcgattttgaact 24551566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 631
Target Start/End: Complemental strand, 24551541 - 24551489
Alignment:
Q  578 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccattt 631  Q
    |||||||||||||||||||||| ||| ||||||||||| |||| |||| |||||    
T  24551541 ctcaatttattattttaatgtt-ttttcaagcttactattgcatctcctcattt 24551489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 33480677 - 33480628
Alignment:
Q  477 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    ||||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  33480677 tggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 33480628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 174; Significance: 3e-93; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 584 - 801
Target Start/End: Complemental strand, 24741738 - 24741521
Alignment:
Q  584 ttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaaaacatgaaattatattattctt 683  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||| |||||    
T  24741738 ttattattttaatgttgtttccaagcttactactgcacctccccatttcttcagtacaccacaaaactgattgattaaaacatgaaattatattcttctt 24741639  T
Q  684 cttctcacgtgcatcaaatatgaaaaaactcacaacataagaatacccagaaaaagcttaacatcaattgttcttcttctagcgtaaaatactcagtttc 783  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| ||||| |||||||||||||    
T  24741638 cttctcacgtacatcaaatatgaaaaaactcacaacataagaatacccaaaaaaggcttaacatcaattgtacttcttctcgcgtacaatactcagtttc 24741539  T
Q  784 caacaaagaaaatcaact 801  Q
    |||||||||| |||||||    
T  24741538 caacaaagaacatcaact 24741521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 478 - 559
Target Start/End: Complemental strand, 24741853 - 24741772
Alignment:
Q  478 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaact 559  Q
    |||||| ||||||||||||||||||||||||||| |||||||  |||  ||||||||||||||||||||||  |||||||||    
T  24741853 ggtgccgtttaatttgggaaagaagacttttttcccaccatggaaaaacctctttaccaaggacacctgtcagttttgaact 24741772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 478 - 526
Target Start/End: Complemental strand, 4479750 - 4479702
Alignment:
Q  478 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    |||||||||||||||||||||| ||| || |||||||||||| ||||||    
T  4479750 ggtgccatttaatttgggaaaggagagttctttctcaccatgggaaagt 4479702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 14573261 - 14573309
Alignment:
Q  478 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 14573309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 578 - 661
Target Start/End: Original strand, 25876629 - 25876712
Alignment:
Q  578 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaa 661  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  25876629 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttccccattacaccacaaaactgattgattaa 25876712  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 478 - 661
Target Start/End: Complemental strand, 7424610 - 7424421
Alignment:
Q  478 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaacttgcnnnnnnnnnnnnnnn 577  Q
    ||||| |||||||||| ||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||| |||| |||||||                   
T  7424610 ggtgcaatttaatttgagaaagaagactttttttccaccatgggaaagtctctttaccaaggacacttgtcggtttttaacttgcaaaaaaaaaaaacaa 7424511  T
Q  578 ------ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaa 661  Q
          |||||||||||||||||||||| ||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  7424510 aaaaaactcaatttattattttaatgttctttccaaacttactactgcacctccccatttccgcattacaccacaaaactgattgattaa 7424421  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 478 - 562
Target Start/End: Original strand, 25876521 - 25876605
Alignment:
Q  478 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaacttgc 562  Q
    |||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| ||||| || ||||| |||| |||||||    
T  25876521 ggtgccatttaatttgggaaagaagatttttttcccaccatgggaaagtctctttacgaaggatacttgtcggtttttaacttgc 25876605  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 476 - 528
Target Start/End: Original strand, 1365827 - 1365879
Alignment:
Q  476 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 528  Q
    |||||| ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  1365827 ttggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtct 1365879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 478 - 526
Target Start/End: Complemental strand, 34992312 - 34992264
Alignment:
Q  478 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  34992312 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 34992264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 528
Target Start/End: Original strand, 61454 - 61504
Alignment:
Q  478 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 528  Q
    |||| ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  61454 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtct 61504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 27918096 - 27918047
Alignment:
Q  477 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    ||||||| ||||||||||||||  ||||||||||| ||||||| ||||||    
T  27918096 tggtgccgtttaatttgggaaatgagacttttttcccaccatgggaaagt 27918047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 579 - 661
Target Start/End: Original strand, 42544596 - 42544678
Alignment:
Q  579 tcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaa 661  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||    
T  42544596 tcaatttattattttaatgttgtttccaagcttactactgcacctccccatttccccattacaccataaaactgattgattaa 42544678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 478 - 562
Target Start/End: Original strand, 42544488 - 42544572
Alignment:
Q  478 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaacttgc 562  Q
    |||||||||||||||||||||||||||||||||| |||||||  |||||||||||| ||||||||| ||||| |||| |||||||    
T  42544488 ggtgccatttaatttgggaaagaagacttttttcccaccatggaaaagtctctttatcaaggacacttgtcggtttttaacttgc 42544572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 476 - 526
Target Start/End: Original strand, 21165445 - 21165495
Alignment:
Q  476 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    |||||||||||||||||||||||||| | || |||| ||||||||||||||    
T  21165445 ttggtgccatttaatttgggaaagaatagttctttcccaccatgagaaagt 21165495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 476 - 526
Target Start/End: Complemental strand, 38695004 - 38694954
Alignment:
Q  476 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    |||||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  38695004 ttggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 38694954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 25371594 - 25371545
Alignment:
Q  477 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    ||||| ||||||||||||||||| |||||| |||| ||||||||||||||    
T  25371594 tggtgacatttaatttgggaaaggagacttctttcccaccatgagaaagt 25371545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 511
Target Start/End: Original strand, 52757813 - 52757846
Alignment:
Q  478 ggtgccatttaatttgggaaagaagacttttttc 511  Q
    ||||||||||||||||||||||||||||||||||    
T  52757813 ggtgccatttaatttgggaaagaagacttttttc 52757846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 37275088 - 37275136
Alignment:
Q  478 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    |||||| ||||||||||||||| |||||| |||| ||||||||||||||    
T  37275088 ggtgccgtttaatttgggaaaggagacttctttcccaccatgagaaagt 37275136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 483 - 526
Target Start/End: Original strand, 3847891 - 3847934
Alignment:
Q  483 catttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    ||||||||||||||||| ||||||||||| ||||||| ||||||    
T  3847891 catttaatttgggaaaggagacttttttcccaccatgggaaagt 3847934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 526
Target Start/End: Original strand, 36864818 - 36864865
Alignment:
Q  479 gtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    |||| |||||||||||||||| ||| || |||||||||||||||||||    
T  36864818 gtgctatttaatttgggaaaggagagttctttctcaccatgagaaagt 36864865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 528
Target Start/End: Original strand, 47198605 - 47198655
Alignment:
Q  478 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 528  Q
    |||| ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  47198605 ggtgacatttaatttgggaaaggagacttctttcccaccatgggaaagtct 47198655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 528
Target Start/End: Complemental strand, 55160114 - 55160065
Alignment:
Q  478 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 528  Q
    |||| ||||||||||||||||| |||| |||||||||||||| ||||||||    
T  55160114 ggtggcatttaatttgggaaaggagac-tttttctcaccatgggaaagtct 55160065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 526
Target Start/End: Original strand, 49610705 - 49610754
Alignment:
Q  477 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    ||||||||||| ||||||||||||||||||||||| | ||||| ||||||    
T  49610705 tggtgccattttatttgggaaagaagacttttttccctccatgggaaagt 49610754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 193850 - 193898
Alignment:
Q  478 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    |||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  193850 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 193898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 526
Target Start/End: Original strand, 43737728 - 43737777
Alignment:
Q  477 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    ||||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  43737728 tggtgccatttaatttgggaaagtagagttatttcccaccatgggaaagt 43737777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 476 - 526
Target Start/End: Complemental strand, 27625 - 27575
Alignment:
Q  476 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    ||||||||||||||||||| |||| ||| ||||||| ||||||| ||||||    
T  27625 ttggtgccatttaatttggaaaaggagagttttttcccaccatgggaaagt 27575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 484 - 526
Target Start/End: Original strand, 4607470 - 4607512
Alignment:
Q  484 atttaatttgggaaagaagacttttttctcaccatgagaaagt 526  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||    
T  4607470 atttaatttgggaaagtagacttttttcccaccatgggaaagt 4607512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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