View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4743-Insertion-3 (Length: 698)
Name: NF4743-Insertion-3
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4743-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 457
Target Start/End: Complemental strand, 6615247 - 6614793
Alignment:
| Q |
8 |
atgtatatgtaataatattcaaatacctaattaaaacactgttatattactttaaaaccannnnnnnn--cttccaacgccacttgtatccatcttaacc |
105 |
Q |
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| T |
6615247 |
atgtatatgtaataatattcaaatacctaattaaaacactattatattactttaaaatcattttttttttcttccaacgccacttgtatccatcttaacc |
6615148 |
T |
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| Q |
106 |
ccaaaatcatcttgtatgtgtgctattttatat--tagggaaatgtttagagtgttgtcaagtagcaattgtaggggcgcaataacactatagtgtagcg |
203 |
Q |
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| T |
6615147 |
ccaaaatcatcatgtatgtgtgctattttatatattagggaaatgttaagagtgttgtcaagtagcaatcgtaggggcgcaataacactatagtgtagcg |
6615048 |
T |
|
| Q |
204 |
aaacttgaataaa--acaaatttttgtagttggtgattaaaggacacagtttttacggtgatgttggactatattagactagactagagttatttgctat |
301 |
Q |
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| T |
6615047 |
aaacttgaataaacaacaaatttttgtagttggtgattaa-ggacacagtttttacggtgatgttggactatattagactagactagagttatttgctat |
6614949 |
T |
|
| Q |
302 |
ctgatgcctaaatctattaagttttttaaatcacaccttcaaactattttattgattattttgtttttgctaagtaatcctatttgttccaagtcagtca |
401 |
Q |
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| T |
6614948 |
ctgatgcctaaatctattaagttttttaaatcacaccttcaaactattttattgattattttgtttttgctaagtaatcctatttgttccaagtcagtca |
6614849 |
T |
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| Q |
402 |
tttttatttcttatgtggcacctatttttcactgtactgctctcatattcttaatg |
457 |
Q |
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| T |
6614848 |
tttttctttcttatgtggcacctatgtttcattgtactgctctcatattcttaatg |
6614793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 493 - 698
Target Start/End: Complemental strand, 6614788 - 6614583
Alignment:
| Q |
493 |
accattattcaatctatgtatgatcccggtcttcatttatttctagttcctttaacagatatccaacacgtgttaattaaagatttcaaaggtctagata |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6614788 |
accattattcaatctatgtatgatcccggtcttcatttatttctagttcctttaacagatatccaacacgtgttaattaaagatttcaaaggtctagata |
6614689 |
T |
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| Q |
593 |
ccaaccctcattgtaacccaatcacctctccctctcgccgcctgcgtcatcccatctcaccgtcaccctgtcaccacctcgccatctcactgccatatat |
692 |
Q |
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| T |
6614688 |
ccaactctcattgtaacccaatcatctctccctctcgccgcctgcgtcatcccgtctcactgtcaccctgtcaccacctcgccatctcactgccatatat |
6614589 |
T |
|
| Q |
693 |
accgtc |
698 |
Q |
| |
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|||||| |
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| T |
6614588 |
accgtc |
6614583 |
T |
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