View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4743-Insertion-7 (Length: 455)
Name: NF4743-Insertion-7
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4743-Insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 7 - 330
Target Start/End: Complemental strand, 52665514 - 52665170
Alignment:
| Q |
7 |
aataggaacaattgaaatcttaattttcccaagatgaaccaaatgaaaggagtagaaataggaacaattaaagagccta--------------------- |
85 |
Q |
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| T |
52665514 |
aataggaacaattgaaatcttaattttcgcaagatgaaccaaatgaaaggagtagaaataggaacaattaaagagcctagtgcccataactctataaata |
52665415 |
T |
|
| Q |
86 |
ctttggttttgaaatccatgtgcagcctagtgcccacagacctttggtagtaggtatgttcctgtttggaagattgaaaccaaatatttactcttttcct |
185 |
Q |
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| T |
52665414 |
ctttggttttgaaatccatgtgcagcctagtgcccacagacctttggtagtaggtatgttcctgtttggaagattgaaaccaaatatttactcttttcct |
52665315 |
T |
|
| Q |
186 |
ccttaacacagtttgggcatggaaaaggggatgtttttgtcaccaagtttcacccattgctattaatcttttgtaattaaggtcaattgactgaaattga |
285 |
Q |
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| T |
52665314 |
cctgaacacagtttgggcatggaaaagggaatgtttttgtcaccaagtttcacccattgctattaatcttttgtaattaaggtcaattgactgagattga |
52665215 |
T |
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| Q |
286 |
ccagccgtcgagattggggaaagattctttttataggcaccaaaa |
330 |
Q |
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| T |
52665214 |
ccagccgtcgaggttggtgaaagattctttttataggcaccaaaa |
52665170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 395 - 455
Target Start/End: Complemental strand, 52665125 - 52665065
Alignment:
| Q |
395 |
catcaatgcttgactttggtaggttaaagaggttaaagaacggttagaatccaaggttgag |
455 |
Q |
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| T |
52665125 |
catcaatgcttgactttggcaggttaaagaggttaaagaacggttagaatccaaggttgag |
52665065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 375
Target Start/End: Complemental strand, 33194277 - 33194240
Alignment:
| Q |
338 |
gaggtattaagtggatagaaattgtgtaccttacattt |
375 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
33194277 |
gaggtattaagtggatagaaattgtgtaccttgcattt |
33194240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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