View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4743-Insertion-8 (Length: 359)
Name: NF4743-Insertion-8
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4743-Insertion-8 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 82 - 359
Target Start/End: Original strand, 48791830 - 48792107
Alignment:
| Q |
82 |
cattacgtacctaacactatggcccttgatctggaagccaggaccttgaggttgatgactggtaagactatgctggtttggtccaaatggtgggctttgt |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48791830 |
cattacgtacctaacactatggcccttgatctggaagccaggaccttgaggttgatgactggtaagactatgctggtttggtccaaatggtgggctttgt |
48791929 |
T |
|
| Q |
182 |
tttgaaacctgatattcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttctgtagtccaagatcaacaacaatgg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48791930 |
tttgaaacctgatattcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttctgtagtccaagatcaacaacaatgg |
48792029 |
T |
|
| Q |
282 |
ttaatccactaataggcctaacatatatattaacactgttttctttcataaaacagtcaactctcacagtccttttac |
359 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48792030 |
ttaatccactaataggcctcacatatatattaacactgttttctttcataaaacagtcaactctcacagtccttttac |
48792107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 89 - 355
Target Start/End: Complemental strand, 48833556 - 48833290
Alignment:
| Q |
89 |
tacctaacactatggcccttgatctggaagccaggaccttgaggttgatgactggtaagactatgctggtttggtccaaatggtgggctttgttttgaaa |
188 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
48833556 |
tacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggtgggttttgttttgaaa |
48833457 |
T |
|
| Q |
189 |
cctgatattcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttctgtagtccaagatcaacaacaatggttaatcc |
288 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
48833456 |
cctgatattcattgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcatacgaccaagatcaacaacaattgttaatcc |
48833357 |
T |
|
| Q |
289 |
actaataggcctaacatatatattaacactgttttctttcataaaacagtcaactctcacagtcctt |
355 |
Q |
| |
|
|||||||||||| ||||| ||||| ||| | ||||||||||||| ||||||| |||||||||||| |
|
|
| T |
48833356 |
actaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtcctt |
48833290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 82 - 359
Target Start/End: Original strand, 15827302 - 15827579
Alignment:
| Q |
82 |
cattacgtacctaacactatggcccttgatctggaagccaggaccttgaggttgatgactggtaagactatgctggtttggtccaaatggtgggctttgt |
181 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| || |||||| |
|
|
| T |
15827302 |
cattacttacctaacactatggccattgatcaagaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggaggtctttgt |
15827401 |
T |
|
| Q |
182 |
tttgaaacctgatattcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttctgtagtccaagatcaacaacaatgg |
281 |
Q |
| |
|
|||||| ||| |||||||||||| ||||| ||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||| |||| || | |
|
|
| T |
15827402 |
tttgaagccttatattcagtgttctcagccgtaggcacaacttcaacttctctatcatgatattcaacaattttcatgagtccaagatcagcaaccattg |
15827501 |
T |
|
| Q |
282 |
ttaatccactaataggcctaacatatatattaacactgttttctttcataaaacagtcaactctcacagtccttttac |
359 |
Q |
| |
|
||||||||||||||||||| ||| | | ||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15827502 |
ttaatccactaataggcctcacaaaaaaattaacagtgttttctttcataaaacaatcaactctcacagtccttttac |
15827579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 89 - 355
Target Start/End: Original strand, 48817385 - 48817651
Alignment:
| Q |
89 |
tacctaacactatggcccttgatctggaagccaggaccttgaggttgatgactggtaagactatgctggtttggtccaaatggtgggctttgttttgaaa |
188 |
Q |
| |
|
||||||||||| || || |||||||| |||||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
48817385 |
tacctaacactgtgaccattgatctgaaagccaggaccttgaggttgataactagcaagactatgctgttttggtccaaatggtggactttgttttgaaa |
48817484 |
T |
|
| Q |
189 |
cctgatattcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttctgtagtccaagatcaacaacaatggttaatcc |
288 |
Q |
| |
|
|| || ||||| || ||||| |||||||| | ||||| ||||| ||||| || |||||||||||| ||| | ||||||| | || ||||| | ||| |
|
|
| T |
48817485 |
ccctgtaatcagtattctcagcagtaggcactgcttcaacatctctatcatggtactcaacaattttcattagactaagatcagccaccatggtgattcc |
48817584 |
T |
|
| Q |
289 |
actaataggcctaacatatatattaacactgttttctttcataaaacagtcaactctcacagtcctt |
355 |
Q |
| |
|
| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48817585 |
agtaataggcctaacatatatattaacagtactttctttcataaaacagtcaactctcacagtcctt |
48817651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 195 - 354
Target Start/End: Complemental strand, 40845799 - 40845640
Alignment:
| Q |
195 |
attcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttctgtagtccaagatcaacaacaatggttaatccactaat |
294 |
Q |
| |
|
|||| ||||| ||| | |||||||||| |||||| |||| |||||||| |||||||| ||| ||| |||||||||||||||| | | |||| |||| |
|
|
| T |
40845799 |
attctgtgttctcatccgtaggcacagcttcaataactctatcatgatactcaacaatcttcataagttcaagatcaacaacaattttaattccagtaat |
40845700 |
T |
|
| Q |
295 |
aggcctaacatatatattaacactgttttctttcataaaacagtcaactctcacagtcct |
354 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| || ||||| | ||||||||||| |
|
|
| T |
40845699 |
aggcctaacatatatattggcagtgttttctttcattaagcagtctaacctcacagtcct |
40845640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 48791755 - 48791802
Alignment:
| Q |
7 |
agttagttaccatgcatccatccccatcaatacactattacgaattcc |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48791755 |
agttagttaccatgcatccatccccatcaatacactattacgaattcc |
48791802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University