View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4743_high_13 (Length: 256)
Name: NF4743_high_13
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4743_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 8191808 - 8191583
Alignment:
| Q |
14 |
gagcttttacatcagttttcaaaataattttgtgatgcagtctgttgaaggaatgaaagttgtttgccatgagttggctcaggccactgatccagaaggc |
113 |
Q |
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| T |
8191808 |
gagcttttacatcagttttcaaaataattttgtgatgcagtcggttgaaggaatgaaagttgtttgccatgagttggctcaggccactgatccagaaggc |
8191709 |
T |
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| Q |
114 |
agtgctatggatgaactcgtgaaggatgcagataggctagtttcatgccttgcaaatgaggcaagatagttttgtcaacaacttttacatctgttgggag |
213 |
Q |
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| T |
8191708 |
agtgctatggatgaactcgtgaaggacgcagataggctagtttcatgccttgcaaatgaggcaagatagttttgtcaacaacttttacatctgttgggag |
8191609 |
T |
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| Q |
214 |
agagctcatgaagtattaacgtttct |
239 |
Q |
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| T |
8191608 |
agagctcatgaagtattaacgtttct |
8191583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 42349616 - 42349388
Alignment:
| Q |
16 |
gcttttacatcagttttcaaaataattt-tgtgatgcagtctgttgaaggaatgaaagttgtttgccatgagttggctcaggccact---gatccagaag |
111 |
Q |
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| T |
42349616 |
gcttttacatctgttttcaaaataatttctgtgatgcagtctgttgaaggaatgaaagttgtctgccatgagttggctcaggcgactagtgatccagaag |
42349517 |
T |
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| Q |
112 |
gcagtgctatggatgaactcgtgaaggatgcagataggctagtttcatgccttgcaaatgaggcaagatagttttgtcaacaacttttacatctgttggg |
211 |
Q |
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| T |
42349516 |
gcaatgccatggatgaactcgttaaggatgcagataggctagtttcatgccttgcagataaggcaagatagttttgtcgataac--tcccctttgtttgg |
42349419 |
T |
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| Q |
212 |
agagagctcatgaagtattaacgtttctttt |
242 |
Q |
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| T |
42349418 |
agagaaatcatgaagtattaatgtttctttt |
42349388 |
T |
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