View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4743_high_14 (Length: 253)
Name: NF4743_high_14
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4743_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 8192012 - 8192257
Alignment:
| Q |
1 |
caagtgcttcattccaatcagtggggccactgggaacagccacgggatgatgtatcaattgtctctcgctgttactatcaagttgagcataatttctcct |
100 |
Q |
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| T |
8192012 |
caagtgcttcattccaatcaatggggccactgggaacagccacgggatgatgtatcaattgtctctcgctgttactatcaagttgagcataatttctcct |
8192111 |
T |
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| Q |
101 |
gacgttcattagcaagatgattaagaataaaagaagcagtgtacttttttcggcggggtaaaggaaataaaaactcaacaaaaacattttcatacctcaa |
200 |
Q |
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| T |
8192112 |
gacattcattagcaagatgattaagaataaaagaagcagtgtacttttttcggcggggtaaaggaaaaaaaaactcaacaaaaacattttcatacctcaa |
8192211 |
T |
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| Q |
201 |
taacgaaccaggaagagatctaaccattcctccactttgctctgtg |
246 |
Q |
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| T |
8192212 |
taacaaaccaggaagagatctaaccattcctccactttgctctgtg |
8192257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 42349821 - 42350084
Alignment:
| Q |
1 |
caagtgcttcattccaatcagtggggccactgggaacagccacgggatgatgtatcaattgtctctcgctgttactatcaagttgagcataatttctcct |
100 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||| ||| || | |||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
42349821 |
caagtgcttcattccaatcagtggggctactggcaacagccacaggacgaggcatcaattgtctctcaatgttactatcaggttgagcataatttctcct |
42349920 |
T |
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| Q |
101 |
gacgttcattagcaagatgattaagaataaaagaagcagtgtacttttttcgg---------------cggggtaaaggaa-----ataaaaactcaaca |
180 |
Q |
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||| || || |||||||||||||||||||| ||||||| ||||||||||| || |||||||| ||| | |||||||||||| |
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| T |
42349921 |
gacattaataagcaagatgattaagaataatagaagcattgtactttttttggtgggggttgttatttaggggtaaaagaaggaacaaaaaaactcaaca |
42350020 |
T |
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| Q |
181 |
aaaacattttcatacctcaataacgaaccaggaagagatctaaccattcctccactttgctctg |
244 |
Q |
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| T |
42350021 |
acaatatttccatacctcaataacggaccaggaagagatctagccatttctccactttgctctg |
42350084 |
T |
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