View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4743_high_17 (Length: 231)
Name: NF4743_high_17
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4743_high_17 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 26489776 - 26489551
Alignment:
| Q |
6 |
atgaagtatgtaggaaattgannnnnnnnaatacttacgagtcactaaaagggtagattacataacgtccatcctgtttttccacttcttcttgcaactg |
105 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26489776 |
atgaagtatgtaggaaattgattttttttaatacttacgagtcactaaaaaggtagattacataacgtccatcctgtttttccacttcttcttgaaactg |
26489677 |
T |
|
| Q |
106 |
atgtgcttgttgcataggatctgcttcctctcgctgttgctgctgctgctcatcgggtactacctcaggcacgatcgaaggttgtgtggtgggaggaggt |
205 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26489676 |
atgtgcttgttgcataggatctgcttcttctcgctgttgctgctgctgctcatcgggtactacctcaggcacgatcgaaggttgtgtggtgggaggaggt |
26489577 |
T |
|
| Q |
206 |
agtgtagagaacggagtagtaatatt |
231 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
26489576 |
agtgtagagaacggagtagtaatatt |
26489551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University