View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4743_high_4 (Length: 433)
Name: NF4743_high_4
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4743_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 30257339 - 30256923
Alignment:
| Q |
1 |
gcctcacactgaacattatcagttggttcaaatgactctccttcgagtaaattgtttggaatgtttaaggcagggcgaacttcacttaatgtgagggtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30257339 |
gcctcacactgaacattatcagttggttcaaatgactctccttcgagtaaattgtttggaatgtttaaggcagggcgaacttcgcttaatgtgagggtat |
30257240 |
T |
|
| Q |
101 |
agtaatcaccaattacctcaacaacaaggtctctccacaactccttcacattacaagtccattctctaatggtttcagcaaaatcctttctcatcctaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30257239 |
agtaatcaccaattacctcaacaacaaggtctctccacaactccttcacattacaagtccattctctaatggtttcagcaaaatcctttctcatcctaat |
30257140 |
T |
|
| Q |
201 |
atcataccaaatctgtttcactgagactgcaacataggataccctctcacactcctcaaacaactcgagaaacacccatttccctctcggtaaccaattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30257139 |
atcataccaaatctgtttcactgagactgcaacataggataccctctcacactcctcaaacaactcgagaaacacccatttccctctcggtaaccaattc |
30257040 |
T |
|
| Q |
301 |
tcagttgattcatcccaatcctgagtgatcctcaattgtttaactccaaccttcatttcatcacctaaatctgggaagaatatgctcctatccttcattc |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30257039 |
tcagttgactcatcccaatcctgagtgatcctcaattgtttaactccaaccttcatttcatcacctaaatctgggaagaatatgctcctatccttcattc |
30256940 |
T |
|
| Q |
401 |
cattgcagtgatcgaat |
417 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
30256939 |
cattgcagcgatcgaat |
30256923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 25941726 - 25941658
Alignment:
| Q |
309 |
ttcatcccaatcctgagtgatcctcaattgtttaactccaaccttcatttcatcacctaaatctgggaa |
377 |
Q |
| |
|
|||||||||||||||||| |||| || || | || ||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
25941726 |
ttcatcccaatcctgagtaatccgcatttcctgaattccgaccttcatttcatcacccaaatcagggaa |
25941658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University