View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4743_high_8 (Length: 331)
Name: NF4743_high_8
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4743_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 34053643 - 34053342
Alignment:
| Q |
19 |
aacacactatagaacaagctgctaaactatcaaacatatctgctgaaagtaattaatcttgtatttttgcacactctttcctaaagattaaatgtggaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34053643 |
aacacactatagaacaagctgctaaactatcaaacatatctgctgaaagtaattaatcttgtatttttgcacactctttcctaaagattaaatgtggaat |
34053544 |
T |
|
| Q |
119 |
caattaaattccttaaacaaatttcttcctaacttgatgaaccaatggttgccactttaggcacatgaacaggaaactcatgaatctcatccatccatgg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34053543 |
taattaaattccttaaacaaatttcttcctaacttgatgaaccaatggttgccactttaggcacatgaacaggaaactcatgaatctcatccatccatgg |
34053444 |
T |
|
| Q |
219 |
atttttctccttggctggatcaacggtcctcaatgcacgccacacagcactgttacatttaaatccagaaccaaatgcaatttgccaagtcctatcacct |
318 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34053443 |
atttttctccttagctggatcaacggtcctcaatgcacgccacacagcactgttacatttaaatccagaaccaaatgcaatttgccaagtcctatcacct |
34053344 |
T |
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| Q |
319 |
tt |
320 |
Q |
| |
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|| |
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| T |
34053343 |
tt |
34053342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 171 - 320
Target Start/End: Complemental strand, 15239792 - 15239643
Alignment:
| Q |
171 |
cactttaggcacatgaacaggaaactcatgaatctcatccatccatggatttttctccttggctggatcaacggtcctcaatgcacgccacacagcactg |
270 |
Q |
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| T |
15239792 |
cactttaggcacatgaacaggaaactcatgaatctcatcaatccaaggattcttctcctttgcaggattaatagtcttcaatgctttccaaacagcacta |
15239693 |
T |
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| Q |
271 |
ttacatttaaatccagaaccaaatgcaatttgccaagtcctatcaccttt |
320 |
Q |
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||||| ||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
15239692 |
ttacacttaaaaccagaaccaaatgcaatttgccaagttctatcaccttt |
15239643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 181 - 320
Target Start/End: Original strand, 27776366 - 27776505
Alignment:
| Q |
181 |
acatgaacaggaaactcatgaatctcatccatccatggatttttctccttggctggatcaacggtcctcaatgcacgccacacagcactgttacatttaa |
280 |
Q |
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|||| ||||||||| ||||||| |||||| |||| ||||| ||||||| | |||||||| |||| || |||| ||| |||||| |||||||||||| |
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| T |
27776366 |
acatcaacaggaaattcatgaagctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaa |
27776465 |
T |
|
| Q |
281 |
atccagaaccaaatgcaatttgccaagtcctatcaccttt |
320 |
Q |
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| T |
27776466 |
atccagacccaaatgcaatttgccaaatcctatcaccttt |
27776505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 320
Target Start/End: Original strand, 19742727 - 19742866
Alignment:
| Q |
181 |
acatgaacaggaaactcatgaatctcatccatccatggatttttctccttggctggatcaacggtcctcaatgcacgccacacagcactgttacatttaa |
280 |
Q |
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|||| |||||||||||||| |||||||| |||| ||||| |||| || ||||||||| |||| ||||||| ||| |||||| ||||||| |||| |
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| T |
19742727 |
acatcaacaggaaactcatttatctcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttacacttaa |
19742826 |
T |
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| Q |
281 |
atccagaaccaaatgcaatttgccaagtcctatcaccttt |
320 |
Q |
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||||||| |||||||||||||||||| ||||||||||||| |
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| T |
19742827 |
atccagacccaaatgcaatttgccaaatcctatcaccttt |
19742866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 320
Target Start/End: Complemental strand, 19797361 - 19797222
Alignment:
| Q |
181 |
acatgaacaggaaactcatgaatctcatccatccatggatttttctccttggctggatcaacggtcctcaatgcacgccacacagcactgttacatttaa |
280 |
Q |
| |
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|||| |||||||||||||| |||||||| |||| ||||| |||| || ||||||||| |||| ||||||| ||| |||||| ||||||| |||| |
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| T |
19797361 |
acatcaacaggaaactcatttatctcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttacacttaa |
19797262 |
T |
|
| Q |
281 |
atccagaaccaaatgcaatttgccaagtcctatcaccttt |
320 |
Q |
| |
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||||||| |||||||||||||||||| ||||||||||||| |
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| T |
19797261 |
atccagacccaaatgcaatttgccaaatcctatcaccttt |
19797222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 320
Target Start/End: Original strand, 19671660 - 19671746
Alignment:
| Q |
234 |
tggatcaacggtcctcaatgcacgccacacagcactgttacatttaaatccagaaccaaatgcaatttgccaagtcctatcaccttt |
320 |
Q |
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||||||||| |||| ||||||| ||| |||| | ||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
19671660 |
tggatcaacattccttaatgcacaccaaacaggagtgttacacttaaatccagacccaaatgcaatttgccaaatcctatcaccttt |
19671746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 320
Target Start/End: Original strand, 19539684 - 19539823
Alignment:
| Q |
181 |
acatgaacaggaaactcatgaatctcatccatccatggatttttctccttggctggatcaacggtcctcaatgcacgccacacagcactgttacatttaa |
280 |
Q |
| |
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|||| ||||||||||||| |||||||| |||| ||||| |||| || ||||||||| || | ||||||| ||| |||||| ||||||| |||| |
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| T |
19539684 |
acatcaacaggaaactcacttatctcatcactccaaggattgatctctttaattggatcaacattctttaatgcacaccaaacagcagtgttacacttaa |
19539783 |
T |
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| Q |
281 |
atccagaaccaaatgcaatttgccaagtcctatcaccttt |
320 |
Q |
| |
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||| ||| |||||||||||||||||| ||||||||||||| |
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| T |
19539784 |
atctagacccaaatgcaatttgccaaatcctatcaccttt |
19539823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 46572907 - 46572851
Alignment:
| Q |
258 |
ccacacagcactgttacatttaaatccagaaccaaatgcaatttgccaagtcctatc |
314 |
Q |
| |
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|||||| ||||||||||| || ||||||||||||||||| |||||||| || ||||| |
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| T |
46572907 |
ccacactgcactgttacacttgaatccagaaccaaatgctatttgccatgttctatc |
46572851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 48672412 - 48672361
Alignment:
| Q |
255 |
acgccacacagcactgttacatttaaatccagaaccaaatgcaatttgccaa |
306 |
Q |
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|||||| |||||||||||||| ||||| ||||||||||| |||| ||||||| |
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| T |
48672412 |
acgccaaacagcactgttacacttaaaaccagaaccaaaagcaagttgccaa |
48672361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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