View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4743_low_1 (Length: 706)

Name: NF4743_low_1
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4743_low_1
NF4743_low_1
[»] chr8 (1 HSPs)
chr8 (17-698)||(4611929-4612624)


Alignment Details
Target: chr8 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 17 - 698
Target Start/End: Original strand, 4611929 - 4612624
Alignment:
Q  17 aaaatcagtaccaaagattctttgttatatacaatataaatttctaattcccaaaaagatttaagaatatttttcattttt-ataagtaacgatgttttt 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4611929 aaaatcagtaccaaagattctttgatatatacaatataaatttctaattcccaaaaagatttaagaatatttttcattttttataagtaacgatgttttt 4612028  T
Q  116 gcaaaaacat----------ctttagggatttcataataaataacaaatacattatagtatcaattttactttttactaaatgaattgtannnnnnnn-a 204  Q
    ||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |    
T  4612029 gcaaaaacatgtaaaaacatctttagggatttcataataaataacaaatacattatagtatcaattttactttttactaaatgaattgtattttttttta 4612128  T
Q  205 tttgtacggaattgttgacaaatatttctttatgaattgttatatattccaacaacctttgacatatcatgcctatttcgttcatactgttcttttcctt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4612129 tttgtacggaattgttgacaaatatttctttatgaattgttatatattccaacaacctttgacatatcatgcctatttcgttcatactgtttttttcctt 4612228  T
Q  305 ttaatctcttccatgttgcataatcatatagcacatatgattatatttggtttctagtagacatatacatttttaaaactaaaagacaatcatatcgata 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4612229 ttaatctcttccatgttgcataatcatatagcacatatgattatatttggtttctagtagacatatacatttttaaaactaaaagacaatcatatcgtta 4612328  T
Q  405 ttttgaaaacatatatgtacattgtacactactagaattactatttacgcaaagtcactaattaatgattactgcaaaagaac-aaaaccctttgttaag 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4612329 ttttgaaaacatatatgtacattgtacactactagaattactatttacgcaaagtcactaattaatgattactgcaaaagaacaaaaaccctttgttaag 4612428  T
Q  504 gaacaagactcaattgtggatgtcatgagcacatatatgtttttagcaagaagacatgaaaatcattagctaactcaattttaaacaaagattcaaattt 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4612429 gaacaagactcaattgtggatgtcatgagcacatatatgtttttagcaagaagacatgaaaatcattagctaactcaattttaaacaaagattcaaattt 4612528  T
Q  604 gaacatttgtcaagaggcattaattcagtga-tttaagtttaactttttaactgttaggataaattaaatcttgtttgaaacagttgtagaataat 698  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4612529 gaacatttgtcaagaggcattaattcagtgattttaagtttaactttttaacttttaggataaattaaatcttgtttgaaacagttgtagaataat 4612624  T

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