View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4743_low_10 (Length: 284)
Name: NF4743_low_10
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4743_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 38055790 - 38055521
Alignment:
| Q |
1 |
tactttatataaagtaatttcttcaaccaaggcaagctgtggttaccaaagtaagatcttattttatgtaaagccaagtttatatagagtcaaggtaagt |
100 |
Q |
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| T |
38055790 |
tactttatataaagtaatttcttcaaccaaggcaagctgtggttaccaaagtaagatcttattttatgtaaagccaagtttatatagagtcaaggtaagt |
38055691 |
T |
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| Q |
101 |
aatgaattgaagggaacaaaatcaggacaatgaatgttgtgccttataattcacttgcaatgtcacgcttgtgttgcnnnnnnnnnnnnnnnnnncgtca |
200 |
Q |
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| T |
38055690 |
aatgaattgaagggaacaaaatcaggacaatgaatgttgtgccttataattcacttgcaatgtcacgcttgtgttgcaaaaagaaaagaaaaaaacgtca |
38055591 |
T |
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| Q |
201 |
tattcttttgtcttttgtgttctcatttagatgcctagatttgatattattatataagagagtgacatgt |
270 |
Q |
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| T |
38055590 |
tattcttttgtcttttgtgttctcatttagatgcctagatttgatattattatataagagagtgaaatgt |
38055521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 38051551 - 38051453
Alignment:
| Q |
68 |
gtaaagccaagtttatatagagtcaaggtaagtaatgaattgaagggaacaaaatcaggacaatgaatgttgtgccttataattcacttgcaatgtcacg |
167 |
Q |
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| T |
38051551 |
gtaaagccaagtgtatgtatagccaaggtaagtaatgaattgaagggaattaaatcaatactatgaatg--gtgcct--taatttagttgcaatgtcacg |
38051456 |
T |
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