View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4743_low_12 (Length: 260)

Name: NF4743_low_12
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4743_low_12
NF4743_low_12
[»] chr4 (3 HSPs)
chr4 (2-243)||(20007991-20008231)
chr4 (2-113)||(49622347-49622458)
chr4 (148-233)||(49622243-49622328)
[»] chr1 (1 HSPs)
chr1 (2-243)||(14122138-14122377)
[»] chr7 (3 HSPs)
chr7 (2-120)||(15636174-15636293)
chr7 (2-113)||(35048592-35048703)
chr7 (148-233)||(35048488-35048573)
[»] chr3 (2 HSPs)
chr3 (2-120)||(53325481-53325600)
chr3 (148-233)||(53325611-53325696)
[»] chr2 (1 HSPs)
chr2 (175-235)||(35056177-35056237)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 20007991 - 20008231
Alignment:
Q  2 cagaagaagtagatcccgtctccactaatgcagaaaattttacaaaacacaaacttaaattaatcaactaaattcacaagtagatataacatgatttcta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  20007991 cagaagaagtagatcccgtctccactaatgcagaaaattttacaaaacacaaacttaaactaatcaactaaattaacaagtggatataacatgatttcta 20008090  T
Q  102 tatatctaactatataaaatagaagacnnnnnnnnnnnnnnnnnnnccaaattattcttacttacttgcggaattgaatgctgaaacaggggaatcaaag 201  Q
    |||||||||||| ||||||||||||||                   ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||    
T  20008091 tatatctaactaaataaaatagaagac-aaaaaaaaaaaaaataagccaaattattcctacttacttgtggaattgaatgttgaaacaggggaatcaaag 20008189  T
Q  202 taaggtgatgtttgaggagggagatgcagcgatgcagttatc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20008190 taaggtgatgtttgaggagggagatgcagcgatgcagttatc 20008231  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 49622458 - 49622347
Alignment:
Q  2 cagaagaagtagatcccgtctccactaatgcagaaaattttacaaaacacaaacttaaattaatcaactaaattcacaagtagatataacatgatttcta 101  Q
    ||||| ||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  49622458 cagaaaaagtagatcccgtttccactaatgcagcaaattttacgaaacacaaacttaaattaatcaactaaattaacaagtggatataacatgatttcta 49622359  T
Q  102 tatatctaacta 113  Q
     |||||||||||    
T  49622358 aatatctaacta 49622347  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 49622328 - 49622243
Alignment:
Q  148 ccaaattattcttacttacttgcggaattgaatgctgaaacaggggaatcaaagtaaggtgatgtttgaggagggagatgcagcga 233  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  49622328 ccaaactattcttacttacttgtggaattgaatgttgaaacaggggaatcaaagtaaagtgatgtttgaggatggagatgcagcga 49622243  T

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Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 14122377 - 14122138
Alignment:
Q  2 cagaagaagtagatcccgtctccactaatgcagaaaattttacaaaacacaaacttaaattaatcaactaaattcacaagtagatataacatgatttcta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  14122377 cagaagaagtagatcccgtctccactaatgcagaaaattttacaaaacacaaacttaaactaatcaactaaattaacaagtggatataacatgatttcta 14122278  T
Q  102 tatatctaactatataaaatagaagacnnnnnnnnnnnnnnnnnnnccaaattattcttacttacttgcggaattgaatgctgaaacaggggaatcaaag 201  Q
    |||||||||||| ||||||||||||||                   ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||    
T  14122277 tatatctaactaaataaaatagaagac--aaaaaaaaaaaaaaaagccaaattattcctacttacttgtggaattgaatgttgaaacaggggaatcaaag 14122180  T
Q  202 taaggtgatgtttgaggagggagatgcagcgatgcagttatc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14122179 taaggtgatgtttgaggagggagatgcagcgatgcagttatc 14122138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 15636174 - 15636293
Alignment:
Q  2 cagaagaagtagatcccgtctccactaa-tgcagaaaattttacaaaacacaaacttaaattaatcaactaaattcacaagtagatataacatgatttct 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||    
T  15636174 cagaagaagtagatcccgtctccactaaatgcagaaaattttacaaaacacaaacttaaatcaatcaactaaattaacaagtggatataacatgatttct 15636273  T
Q  101 atatatctaactatataaaa 120  Q
    ||||||||||||| ||||||    
T  15636274 atatatctaactagataaaa 15636293  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 35048703 - 35048592
Alignment:
Q  2 cagaagaagtagatcccgtctccactaatgcagaaaattttacaaaacacaaacttaaattaatcaactaaattcacaagtagatataacatgatttcta 101  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||    
T  35048703 cagaagaagtagatcccgtttccactaatgcagcaaattttacaaaacacaaacttaaatcaatcaactaaattaacaagtggatataacatgatttcta 35048604  T
Q  102 tatatctaacta 113  Q
     |||||||||||    
T  35048603 aatatctaacta 35048592  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 35048573 - 35048488
Alignment:
Q  148 ccaaattattcttacttacttgcggaattgaatgctgaaacaggggaatcaaagtaaggtgatgtttgaggagggagatgcagcga 233  Q
    |||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||||||||| |||||||||||||    
T  35048573 ccaaattattcttacttacttgtggaattgaatgttgaaacagaggaatcaaagtaaagtgatgtttgaggatggagatgcagcga 35048488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 53325481 - 53325600
Alignment:
Q  2 cagaagaagtagatcccgtctccactaa-tgcagaaaattttacaaaacacaaacttaaattaatcaactaaattcacaagtagatataacatgatttct 100  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  53325481 cagaagaagtagatcccgtctccactaaatacagaaaattttacaaaacacaaacttaaattaatcaactaaattaacaagtggatataacatgatttct 53325580  T
Q  101 atatatctaactatataaaa 120  Q
    ||||||||||||| ||||||    
T  53325581 atatatctaactagataaaa 53325600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 53325611 - 53325696
Alignment:
Q  148 ccaaattattcttacttacttgcggaattgaatgctgaaacaggggaatcaaagtaaggtgatgtttgaggagggagatgcagcga 233  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  53325611 ccaaattattcttacttacttgtggaattgaatgttgaaacaggggaatcagagtaaagtgatgtttgaggatggagatgcagcga 53325696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 35056177 - 35056237
Alignment:
Q  175 ttgaatgctgaaacaggggaatcaaagtaaggtgatgtttgaggagggagatgcagcgatg 235  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||  ||||||||||    
T  35056177 ttgaatgctgaaacaggggaatcaaagtaaagtgatgtttgaggatggaattgcagcgatg 35056237  T

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