View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4743_low_13 (Length: 258)
Name: NF4743_low_13
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4743_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 2204190 - 2204128
Alignment:
| Q |
45 |
atcctaagtggtatgttgtgtgggccaatgatatcaacaatcgtatactccc-gtatgcgttg |
106 |
Q |
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| T |
2204190 |
atcctaagtggtatgttgtgtgggccaatgatatcaacaatcgtatactccctgtatgcgttg |
2204128 |
T |
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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 2213529 - 2213460
Alignment:
| Q |
14 |
gaatttgatactgactctgatgatcctaaaaatcctaagtggtatgttgtgtgggccaatgatatcaaca |
83 |
Q |
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|||||||||| | |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| |
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| T |
2213529 |
gaatttgatatcggctctgatgatcctaaaaatcctaaatggtatgtagtgtgtgccaatgatatcaaca |
2213460 |
T |
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