View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4743_low_2 (Length: 598)
Name: NF4743_low_2
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4743_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 3 - 479
Target Start/End: Complemental strand, 28748921 - 28748452
Alignment:
| Q |
3 |
atcacattttccagaggagaaaggaaaccacgatttctcgcagacaaaactgaacaggtaaaatccagcacgcatatgtcagtgcatataccacaaacca |
102 |
Q |
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| T |
28748921 |
atcacattttccagaggagaaaggaaaccacgatttctcgcagacaaaactgaacaggtaaaatccagcacgcatatgtcagtgcatatcccacaaacca |
28748822 |
T |
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| Q |
103 |
aaacctgtaacaagggaaaaccagcgcctcagaacctcagccaagaatctatgaactaaacaaaaaatgatatcaataaagaatctctcagttgcggttg |
202 |
Q |
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| T |
28748821 |
aaacctgtaacaagggaaaaccagcgcctcagaacctcagccaagaatctatgaactaaa-aaaaaatgatatcaataaagaatctctcagttgcggttg |
28748723 |
T |
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| Q |
203 |
tggtcaaggttccactgcaagctttcatattgcagatgcagccaatgcggctgcaattgcggttactatgccattatggtaaggcctttgtattgcagtc |
302 |
Q |
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| T |
28748722 |
tggtcaaggttccactgcaagctttcatattgcagatgcagccaatgcggctgcaattgcggttactatgccattatggtaaggcctttgtattgcagtc |
28748623 |
T |
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| Q |
303 |
gcaattggcagacctcaatttagaactatggtctcaagattccagcaatcattagttgaggagacatataggaaagtgaaaacattaattttcacttgga |
402 |
Q |
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| T |
28748622 |
gcaattggcagacctcaatttagaactatggtctcaagattccaacaatcattagttggggagacatatagggaagtgaaaacattaattctcacttcga |
28748523 |
T |
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| Q |
403 |
aaaagtgtaaaaccaaaaccaaaacctatcgttatttatcatggttcagaagattttaatccttctcatttatagtg |
479 |
Q |
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| T |
28748522 |
aaaagtgtaaaaccaa------aacctatcgttatttatcatggttcagaagattttaatccttctcatttatagtg |
28748452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 544 - 581
Target Start/End: Complemental strand, 28748387 - 28748350
Alignment:
| Q |
544 |
atagtggcttaccgtggtaatgaagcatataatgccac |
581 |
Q |
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| T |
28748387 |
atagtggcttaccatggtaatgaagcatataatgccac |
28748350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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