View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4743_low_3 (Length: 495)
Name: NF4743_low_3
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4743_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 166 - 481
Target Start/End: Original strand, 37789942 - 37790272
Alignment:
| Q |
166 |
tgtttacctcttgttttcatcttcttccacaaacgacaact---------tctaagttaacttgcttcctcgtttttgtggattgaactgaaaccccaaa |
256 |
Q |
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| T |
37789942 |
tgtttacctcttgttttcttcttcttccacaaacgacaactgcttcgccttctaagttaacttgcttcctcgtttttgtggattgaactgaaaccccaaa |
37790041 |
T |
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| Q |
257 |
gaaaaggcaacggtccgtgtcccctttcctttgtcgtcgt-------caccattcccttgcagttgttcatattcacagttgttttatcatgaaacatct |
349 |
Q |
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| T |
37790042 |
gaaaaggcaacggtccgtgtcccattacctttgtcgtcgttcgtcgtcaccattcccttgcact-gttcatcgtcacggttgttttatcatgaaacatct |
37790140 |
T |
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| Q |
350 |
cttatcattactccgtcgaagactgagttccataacgaaacctctgatccaccaccaccatcgtagacactgagttttgtcggttgcactctgagtatcc |
449 |
Q |
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| T |
37790141 |
cttatcattgctccttcgaagactgagttccataacgaaacctctgatccaccaccaccatcgtagacactgagttttgtcggttgcactctgagtatcc |
37790240 |
T |
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| Q |
450 |
gagtttgacttagttggtcaccagttgaaagt |
481 |
Q |
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| T |
37790241 |
gagtttgactcagttggtcaccgattgaaagt |
37790272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 37789785 - 37789878
Alignment:
| Q |
9 |
acatcatcagaaccaaaatgggcatatggaaccacaacatgcagacttcagtaataaactattgggatttctatatgccataggaagcagctgc |
102 |
Q |
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| T |
37789785 |
acatcatcagaaccaaaatgggcatatggaactacaacatgcagacttcagtaataaactattgggatttctatatgccataggaagcagctgc |
37789878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 37800629 - 37800718
Alignment:
| Q |
13 |
catcagaaccaaaatgggcatatggaaccacaacatgcagacttcagtaataaactattgggatttctatatgccataggaagcagctgc |
102 |
Q |
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| T |
37800629 |
catcagaaccaaaatgggcatatggagccgcaacatgcagactttagtaataaactattgggcgttctatgtgctataggaagcagctgc |
37800718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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