View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4743_low_6 (Length: 369)
Name: NF4743_low_6
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4743_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 20 - 362
Target Start/End: Complemental strand, 5446285 - 5445943
Alignment:
| Q |
20 |
attgctgcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgcaaggctctttgacttcatcgttgactctaaacatattcttca |
119 |
Q |
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| T |
5446285 |
attgctgcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgcaaggctctttgacttcatcgttgactctaaacatattcttca |
5446186 |
T |
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| Q |
120 |
atagttgttgaatcttcggaattctagtagaccctcctacaagaacaaactcatgaacttggcttttactaatttttacctcaaccaaacacttctccac |
219 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446185 |
atagttgttgaatcttcggaattgtagtagaccctcctacaagaacaaactcatgaacttggcttttactaatttttacctcaaccaaacacttctccac |
5446086 |
T |
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| Q |
220 |
agtctccatgcactttttgaacaaatccttgtttatttcctcaaagaaagctctagtaacagtgaaatgtagatcaatccctccacatagagaatcaagc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446085 |
agtctccatgcactttttgaacaaatccttgtttatttcctcaaagaaagctctagtaacagtgaaatgtagatcaatccctccacatagagaatcaagc |
5445986 |
T |
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| Q |
320 |
tcaataactgtttgtgaagatgaagaaagtaacctctttgctt |
362 |
Q |
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| T |
5445985 |
tcaataactgtttgtgaagatgaagaaagtaacctctttgctt |
5445943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 280
Target Start/End: Original strand, 5433197 - 5433294
Alignment:
| Q |
183 |
ttttactaatttttacctcaaccaaacacttctccacagtctccatgcactttttgaacaaatccttgtttatttcctcaaagaaagctctagtaaca |
280 |
Q |
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| T |
5433197 |
ttttacttatttttgcctcatcctaaaatttttccagtgtctccatgcattgtttaaacaagtcctggtttattccctcaaacaaagctctagtaaca |
5433294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 5433099 - 5433183
Alignment:
| Q |
23 |
gctgcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgcaaggctctttgacttcatcgttgactctaa |
107 |
Q |
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| T |
5433099 |
gctgcttgaaccgaggcatcatacaccacaacttcataaggattaatgcttttgcatggctctttgatttctccattgactctaa |
5433183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 7541887 - 7541936
Alignment:
| Q |
29 |
tgaacagcggcgccataagccacagcttcatcaggattaatgcttttgca |
78 |
Q |
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| T |
7541887 |
tgaacagctgccccataagcaacagcctcatcaggattaatgctcttgca |
7541936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 14703069 - 14703118
Alignment:
| Q |
29 |
tgaacagcggcgccataagccacagcttcatcaggattaatgcttttgca |
78 |
Q |
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| T |
14703069 |
tgaacagctgccccataagctacagcttcatcagggttaatgctgttgca |
14703118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 17704485 - 17704436
Alignment:
| Q |
118 |
caatagttgttgaatcttcggaattctagtagaccctcctacaagaacaa |
167 |
Q |
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| T |
17704485 |
caatagttgttgaacctttggaattctggtagaacctcctacaaggacaa |
17704436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 17717117 - 17717068
Alignment:
| Q |
118 |
caatagttgttgaatcttcggaattctagtagaccctcctacaagaacaa |
167 |
Q |
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|||||||||||||| ||| |||||||| ||||| ||||||||||| |||| |
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| T |
17717117 |
caatagttgttgaacctttggaattctggtagaacctcctacaaggacaa |
17717068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 11999066 - 11999118
Alignment:
| Q |
26 |
gcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgca |
78 |
Q |
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||||||||||| || |||||||| ||||| |||||||| |||||||| ||||| |
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| T |
11999066 |
gcttgaacagctgccccataagctacagcctcatcagggttaatgctcttgca |
11999118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 54396078 - 54396142
Alignment:
| Q |
23 |
gctgcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgcaaggctcttt |
87 |
Q |
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| T |
54396078 |
gctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctcttt |
54396142 |
T |
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