View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4743_low_9 (Length: 299)

Name: NF4743_low_9
Description: NF4743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4743_low_9
NF4743_low_9
[»] chr4 (12 HSPs)
chr4 (18-299)||(34946351-34946630)
chr4 (75-250)||(34946113-34946280)
chr4 (75-256)||(10396120-10396293)
chr4 (87-256)||(11197227-11197388)
chr4 (75-183)||(10396405-10396513)
chr4 (77-163)||(53468079-53468164)
chr4 (76-260)||(922410-922584)
chr4 (78-183)||(2917475-2917580)
chr4 (82-183)||(11307640-11307741)
chr4 (186-292)||(11197028-11197137)
chr4 (82-183)||(11307351-11307452)
chr4 (73-141)||(12717932-12718000)
[»] chr7 (12 HSPs)
chr7 (78-182)||(27597977-27598081)
chr7 (84-270)||(21416124-21416301)
chr7 (77-292)||(21416388-21416598)
chr7 (78-162)||(28445214-28445297)
chr7 (76-158)||(36675183-36675265)
chr7 (75-165)||(2463145-2463236)
chr7 (186-292)||(23568959-23569068)
chr7 (83-182)||(2463442-2463541)
chr7 (78-182)||(27597692-27597794)
chr7 (83-160)||(5862767-5862844)
chr7 (108-157)||(7631293-7631342)
chr7 (204-288)||(27597803-27597890)
[»] chr2 (10 HSPs)
chr2 (76-181)||(28226327-28226432)
chr2 (77-182)||(30219943-30220048)
chr2 (75-273)||(28226644-28226833)
chr2 (76-273)||(35448596-35448783)
chr2 (74-157)||(13792581-13792664)
chr2 (102-183)||(19548160-19548241)
chr2 (186-273)||(22062773-22062860)
chr2 (75-170)||(40053443-40053538)
chr2 (75-124)||(10066529-10066578)
chr2 (86-149)||(19547869-19547932)
[»] chr5 (14 HSPs)
chr5 (75-256)||(13042985-13043158)
chr5 (75-256)||(13112981-13113154)
chr5 (76-183)||(13112527-13112634)
chr5 (76-164)||(13042529-13042617)
chr5 (83-256)||(13112245-13112410)
chr5 (83-256)||(13042251-13042416)
chr5 (186-269)||(13112794-13112877)
chr5 (77-149)||(13042703-13042775)
chr5 (77-149)||(13112701-13112773)
chr5 (76-140)||(36389098-36389162)
chr5 (186-256)||(36389277-36389346)
chr5 (76-141)||(26420851-26420916)
chr5 (84-183)||(5963681-5963780)
chr5 (82-127)||(3455872-3455917)
[»] chr3 (18 HSPs)
chr3 (75-161)||(16143427-16143513)
chr3 (76-164)||(53595950-53596038)
chr3 (76-164)||(53596265-53596353)
chr3 (86-169)||(43481588-43481671)
chr3 (81-169)||(40195895-40195983)
chr3 (75-183)||(43978636-43978745)
chr3 (77-164)||(48127895-48127982)
chr3 (75-155)||(32201028-32201108)
chr3 (210-277)||(43978548-43978615)
chr3 (186-249)||(48127605-48127668)
chr3 (186-236)||(53596567-53596617)
chr3 (193-248)||(48127819-48127874)
chr3 (84-126)||(54017666-54017708)
chr3 (186-256)||(16143530-16143597)
chr3 (76-127)||(17732021-17732073)
chr3 (76-127)||(19033252-19033304)
chr3 (76-148)||(29795939-29796011)
chr3 (83-183)||(42059856-42059956)
[»] chr8 (8 HSPs)
chr8 (79-183)||(5981503-5981607)
chr8 (186-256)||(18829838-18829908)
chr8 (86-181)||(2954571-2954666)
chr8 (103-162)||(3670881-3670940)
chr8 (86-160)||(2954309-2954383)
chr8 (96-274)||(3671119-3671289)
chr8 (84-164)||(5981813-5981893)
chr8 (88-156)||(29103302-29103370)
[»] chr1 (7 HSPs)
chr1 (81-183)||(15327851-15327953)
chr1 (81-183)||(4392253-4392355)
chr1 (75-237)||(31973350-31973504)
chr1 (77-162)||(26231511-26231596)
chr1 (77-242)||(31973636-31973793)
chr1 (75-141)||(12466272-12466338)
chr1 (75-141)||(34665912-34665978)
[»] chr6 (7 HSPs)
chr6 (76-249)||(7301585-7301752)
chr6 (75-164)||(11637801-11637890)
chr6 (75-147)||(7301397-7301469)
chr6 (186-288)||(11637973-11638079)
chr6 (108-286)||(15092081-15092253)
chr6 (83-141)||(6250081-6250139)
chr6 (83-139)||(21297238-21297294)
[»] scaffold0256 (1 HSPs)
scaffold0256 (77-165)||(13360-13448)
[»] scaffold0548 (1 HSPs)
scaffold0548 (82-183)||(4129-4231)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 34946630 - 34946351
Alignment:
Q  18 gaaaatgtattacatcgatacatgtgtttattatatttaatcattttgtttattcaaattgttggaaatcaagtgtgcgtgataatgtctcacatcgact 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34946630 gaaagtgtattacatcgatacatgtgtttattatatttaatcattttgtttattcaaattgttggaaatcaagtgtg-gtgataatgtctcacatcgact 34946532  T
Q  118 agaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggttttggtcttttgggtaagagtgtagtgtctctctcttag 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34946531 agaaatggagcaaacgttggatatttaagagaagagacccataaacctgatgtcttagggttttggtcttttggg-aagagtgtagtgtctctctcttag 34946433  T
Q  218 tgggtcctagacgtttagcctattgccgctccaagcgcttcgtagactccccaacaaggtatcagagcctggttatgtttgc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34946432 tgggtcctagacgtttagcctattgccgctccaagcgcttcgtagactccccaacaaggtatcagagcctggttaggtttgc 34946351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 34946280 - 34946113
Alignment:
Q  75 attgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtctta 174  Q
    |||||||||||||||||||| ||||||||||| |||||| ||| ||||||||||||| |||| ||||||||| || ||||| | ||||||| ||| ||||    
T  34946280 attgttggaaatcaagtgtgagtgataatgtcccacatcaacttgaaatggagcaaacgttgaatatttaagggaggagactcgtaaacctcatgcctta 34946181  T
Q  175 gggttttggtcttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctcca 250  Q
    ||         |||||||||||||||| |||||||||||||||  ||||||||||||||||||||||  |||||||    
T  34946180 gg--------attttgggtaagagtgtggtgtctctctcttagaaggtcctagacgtttagcctattatcgctcca 34946113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 75 - 256
Target Start/End: Original strand, 10396120 - 10396293
Alignment:
Q  75 attgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtctta 174  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||| |||||||  |||||||||||||   || ||||    
T  10396120 attgttggaaatcaagtgtgagtgattatgtctcacatcgacaagaaatggaggaaatgttgaatatataagagagaagacccataaacccattgcctta 10396219  T
Q  175 gggttttggtcttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgct 256  Q
    |||        |||| |||||||| || ||||||||||||||| ||||| ||||||||||||   |||||||||| ||||||    
T  10396220 ggg--------ttttaggtaagagggtggtgtctctctcttagcgggtcatagacgtttagctcgttgccgctcccagcgct 10396293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 87 - 256
Target Start/End: Original strand, 11197227 - 11197388
Alignment:
Q  87 caagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggttttggtct 186  Q
    |||||||| ||||| ||| |||||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||   || |||||||        |    
T  11197227 caagtgtgagtgattatgcctcacatcgactagaaatggaggaaacgttggatatataagagaggagacccataaacccattgccttaggg--------t 11197318  T
Q  187 tttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgct 256  Q
    ||||||||||||||| |||||||||||||||  ||||||||  |||||||| ||||||||||||| ||||    
T  11197319 tttgggtaagagtgtggtgtctctctcttagctggtcctaggtgtttagcccattgccgctccaaacgct 11197388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 10396405 - 10396513
Alignment:
Q  75 attgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtctta 174  Q
    |||||||||||||||||||| ||||| |||||||| || |||||||||||||| ||||||||||||| ||||||| ||||||||||||||   || ||||    
T  10396405 attgttggaaatcaagtgtgagtgattatgtctcatattgactagaaatggaggaaatgttggatatataagagaggagacccataaacccattgcctta 10396504  T
Q  175 gggttttgg 183  Q
    |||||||||    
T  10396505 gggttttgg 10396513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 53468164 - 53468079
Alignment:
Q  77 tgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaac 163  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||| ||| ||| |||||||||||||    
T  53468164 tgttggaaatcaagtgtgagtgataatgtctcacatcgattagaaatggagcaaatgttgaatatataa-agaggagacccataaac 53468079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 260
Target Start/End: Original strand, 922410 - 922584
Alignment:
Q  76 ttgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttag 175  Q
    ||||||||||||||||| | ||  | ||||| ||||||||||||||||| |||||| ||| |||||  |||||| ||||||||||||||   ||||||||    
T  922410 ttgttggaaatcaagtgagtgt--ttatgtcccacatcgactagaaatgaagcaaacgttagatatagaagagaggagacccataaacccattgtcttag 922507  T
Q  176 ggttttggtcttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgcttcgt 260  Q
    ||         ||||| ||||||||| |||||||||| |||| || |||||||||||||    ||||||||||||| ||||||||    
T  922508 gg--------gtttggataagagtgtggtgtctctcttttagcggatcctagacgtttaagtcattgccgctccaaacgcttcgt 922584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 2917580 - 2917475
Alignment:
Q  78 gttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttaggg 177  Q
    |||||||||||||| || ||||| ||||||||| ||||||| |||||||| |||||||| ||||  |||||||||||| |||||| |   | ||||||||    
T  2917580 gttggaaatcaagtctgagtgatgatgtctcacgtcgactataaatggagtaaatgttgaatatacaagagaagagactcataaatccactatcttaggg 2917481  T
Q  178 ttttgg 183  Q
    ||||||    
T  2917480 ttttgg 2917475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 11307741 - 11307640
Alignment:
Q  82 gaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggtttt 181  Q
    ||||| ||||||| |||||  |||||||||||||||| |||||||| ||||||||||||| | ||||| | ||| |||| |||| ||||||||  |||||    
T  11307741 gaaattaagtgtgagtgattgtgtctcacatcgactataaatggaggaaatgttggatatatgagagaggggacacatatacctcatgtcttaatgtttt 11307642  T
Q  182 gg 183  Q
    ||    
T  11307641 gg 11307640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 292
Target Start/End: Original strand, 11197028 - 11197137
Alignment:
Q  186 ttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgcttcgtagactccccaacaa---ggtatcag 282  Q
    |||| ||||||||||  |||||||||||||||  ||||||||  |||||||| ||||||||||||| |||| |  |||||||| |||||   ||||||||    
T  11197028 ttttaggtaagagtgaggtgtctctctcttagctggtcctaggtgtttagcccattgccgctccaaacgctccccagactcccaaacaaactggtatcag 11197127  T
Q  283 agcctggtta 292  Q
    ||||| ||||    
T  11197128 agcctagtta 11197137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 11307452 - 11307351
Alignment:
Q  82 gaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggtttt 181  Q
    |||||||||||||  |||  |||||||||||| ||||||||||||| |||  |||||||| ||||||| | ||| | || |||||||| ||||  |||||    
T  11307452 gaaatcaagtgtgactgactatgtctcacatcaactagaaatggaggaaaccttggatatataagagaggggacacgtatacctgatgccttaatgtttt 11307353  T
Q  182 gg 183  Q
    ||    
T  11307352 gg 11307351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 12718000 - 12717932
Alignment:
Q  73 aaattgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatat 141  Q
    |||||||| ||||||||||||| | ||||||||  ||||| || ||||||||||||||| |||| ||||    
T  12718000 aaattgttagaaatcaagtgtgagagataatgttccacattgattagaaatggagcaaacgttgaatat 12717932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 27597977 - 27598081
Alignment:
Q  78 gttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttaggg 177  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||| ||||||||||||||   ||||||||||    
T  27597977 gttggaaatcaagtgtgagtgataatgtctcacatcgactataaattgagcaaacgttggatatataagagaggagacccataaacccattgtcttaggg 27598076  T
Q  178 ttttg 182  Q
    |||||    
T  27598077 ttttg 27598081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 270
Target Start/End: Complemental strand, 21416301 - 21416124
Alignment:
Q  84 aatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggttttgg 183  Q
    ||||||||||| ||||| ||||| |||||| |||||| ||||| ||||  |||||||| ||||||| ||||||||||||||   || |||||||||||||    
T  21416301 aatcaagtgtgagtgattatgtcccacatcaactagacatggaacaaaaattggatatataagagaggagacccataaacccattgccttagggttttgg 21416202  T
Q  184 tcttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgcttcgtagactcccca 270  Q
            |||||||||| ||||||||||||||| |||||||||| |||||| | |||||||||||||| || || |||||||||||    
T  21416201 --------gtaagagtgtggtgtctctctcttagcgggtcctagatgtttagtccattgccgctccaagtgc-tcctagactcccca 21416124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 77 - 292
Target Start/End: Complemental strand, 21416598 - 21416388
Alignment:
Q  77 tgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagg 176  Q
    |||| ||||||||||||| ||||| ||||  |||||| || | |||||||||||| ||||| ||| ||||||  |||||||||||||  | |||||| ||    
T  21416598 tgttagaaatcaagtgtgagtgattatgttccacatcaacaataaatggagcaaaagttggttatataagagcggagacccataaactcgttgtctttgg 21416499  T
Q  177 gttttggtcttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgcttcgtagactccccaacaa-- 274  Q
    |||||||        |||||| ||| ||||||||||||||| |||||||||| ||| | || |||| |||||||||||||||  ||||||||||||||      
T  21416498 gttttgg--------gtaagaatgtggtgtctctctcttagcgggtcctagatgttcaacccattgtcgctccaagcgcttcccagactccccaacaaat 21416407  T
Q  275 -ggtatcagagcctggtta 292  Q
     ||||||||||||| ||||    
T  21416406 tggtatcagagcctagtta 21416388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 28445297 - 28445214
Alignment:
Q  78 gttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaa 162  Q
    |||||||||||| |||| ||||||||||| |||||||||||| |||||||||||| |||||||| |||||||  |||||||||||    
T  28445297 gttggaaatcaactgtgagtgataatgtcccacatcgactag-aatggagcaaatattggatatataagagagaagacccataaa 28445214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 36675183 - 36675265
Alignment:
Q  76 ttgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagaccca 158  Q
    |||||| ||||||| |||| ||||||||||| ||||||||||| |||||||| ||| ||||||||| ||||||| ||||||||    
T  36675183 ttgttgaaaatcaaatgtgagtgataatgtcccacatcgactataaatggagaaaacgttggatatataagagatgagaccca 36675265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 2463145 - 2463236
Alignment:
Q  75 attgttggaaa-tcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacct 165  Q
    ||||||||||| | ||||||| ||||| |||||||||||||||||||||  ||| ||||||||||||| ||||||||  |||||||| ||||    
T  2463145 attgttggaaaattaagtgtgagtgattatgtctcacatcgactagaaaatgaggaaatgttggatatataagagaatggacccatatacct 2463236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 292
Target Start/End: Complemental strand, 23569068 - 23568959
Alignment:
Q  186 ttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgcttcgtagactccccaacaa---ggtatcag 282  Q
    ||||||||||||||||  ||||||||  |||||||||||||||||||||||  ||||||||| | |  ||| |  ||||||||||||||   |||||||     
T  23569068 ttttgggtaagagtgtgatgtctctcatttagtgggtcctagacgtttagctcattgccgctaccaatgctccccagactccccaacaaactggtatcat 23568969  T
Q  283 agcctggtta 292  Q
    ||||||||||    
T  23568968 agcctggtta 23568959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 2463442 - 2463541
Alignment:
Q  83 aaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggttttg 182  Q
    |||||||||||| || || ||||| ||||| |  ||||||||||| |||| |||||||| ||||||| | ||| |||| |||||||| |||| |||||||    
T  2463442 aaatcaagtgtgagtaattatgtcccacattggttagaaatggaggaaatattggatatataagagaggggacacatatacctgatgccttaaggttttg 2463541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 27597692 - 27597794
Alignment:
Q  78 gttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttaggg 177  Q
    ||||||||| ||||||| ||||||   || |||||||| ||||||||||||||| ||||||||| |||||| ||| | ||||||||  | ||||||| ||    
T  27597692 gttggaaattaagtgtgagtgatatattc-cacatcgattagaaatggagcaaacgttggatatataagag-agaaatccataaactcgttgtcttaagg 27597789  T
Q  178 ttttg 182  Q
    |||||    
T  27597790 ttttg 27597794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 5862844 - 5862767
Alignment:
Q  83 aaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccata 160  Q
    |||||||||||| ||||| || || || || || |||||| |||| ||||||||||||| ||||||| || |||||||    
T  5862844 aaatcaagtgtgagtgattatatcccaaattgattagaaaaggaggaaatgttggatatataagagatgatacccata 5862767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 7631342 - 7631293
Alignment:
Q  108 cacatcgactagaaatggagcaaatgttggatatttaagagaagagaccc 157  Q
    ||||||||||  |||||||| ||||||||||||| ||||||| |||||||    
T  7631342 cacatcgactgaaaatggagaaaatgttggatatataagagaggagaccc 7631293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 27597803 - 27597890
Alignment:
Q  204 tgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgcttcgtagactccccaacaa---ggtatcagagcctg 288  Q
    |||||||||| | ||||||||||||  |||| || |||| ||||||||||||| |  ||||||||||| ||   ||||||||||||||    
T  27597803 tgtctctctcattgtgggtcctagatatttaacccattgtcgctccaagcgctccccagactccccaataaactggtatcagagcctg 27597890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 28226327 - 28226432
Alignment:
Q  76 ttgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttag 175  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||| ||||||||| ||||||| |||||||||||||    ||||||||    
T  28226327 ttgttggaaatcaagtgtgagtgttaatgtcccacatcgactagaaatggaggaaacgttggatatataagagaggagacccataaacacattgtcttag 28226426  T
Q  176 ggtttt 181  Q
    ||||||    
T  28226427 ggtttt 28226432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 30220048 - 30219943
Alignment:
Q  77 tgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagg 176  Q
    |||||||||||||||||| | ||| ||||| |||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||||   |||||||||    
T  30220048 tgttggaaatcaagtgtgagcgattatgtcccacatcgactagaactggaggaaatgttggatacttaagagaggagacccataaaccaattgtcttagg 30219949  T
Q  177 gttttg 182  Q
    ||||||    
T  30219948 gttttg 30219943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 75 - 273
Target Start/End: Original strand, 28226644 - 28226833
Alignment:
Q  75 attgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtctta 174  Q
    ||||||||||||||||||||  ||||||| || ||||||||| |||||||| |||||| |||||||| ||||||| ||||| ||||||||   |||||||    
T  28226644 attgttggaaatcaagtgtgactgataatatcacacatcgacaagaaatggggcaaatattggatatataagagaggagactcataaacccattgtctta 28226743  T
Q  175 gggttttggtcttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgcttcgtagactccccaaca 273  Q
    ||         |||| ||||||||||| |||||||||||||   || |||||||||||||||  |||| | ||||||||| |||  | |||||||||||    
T  28226744 gg---------tttttggtaagagtgtggtgtctctctctttacggatcctagacgtttagcacattgtcactccaagcgtttctcaaactccccaaca 28226833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 273
Target Start/End: Complemental strand, 35448783 - 35448596
Alignment:
Q  76 ttgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttag 175  Q
    |||||||||||||||||||  |||| |||||||||||||||||||||| ||| ||| ||| ||||| ||||||| |||||| |||||     || |||||    
T  35448783 ttgttggaaatcaagtgtgtatgattatgtctcacatcgactagaaatagaggaaacgtttgatatataagagaggagacctataaattaattgccttag 35448684  T
Q  176 ggttttggtcttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgcttcgtagactccccaaca 273  Q
     ||||| ||        ||||||||  |||  ||||||||||||| || ||||||||||| ||||||||||||||||||||    |||||||||||||    
T  35448683 agtttttgt--------taagagtgcggtg--tctctcttagtggatcttagacgtttagtctattgccgctccaagcgctctccagactccccaaca 35448596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 13792664 - 13792581
Alignment:
Q  74 aattgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagaccc 157  Q
    ||||||||||||||||||||| ||||| ||||| |||||| ||||||||||||| |||| || ||||| ||||||| |||||||    
T  13792664 aattgttggaaatcaagtgtgagtgattatgtcccacatcaactagaaatggaggaaatatttgatatataagagaggagaccc 13792581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 19548160 - 19548241
Alignment:
Q  102 atgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggttttgg 183  Q
    ||||| |||||||||||||||| ||| ||||||||||||| ||||||| |||||||||| | || |||||||| ||||||||    
T  19548160 atgtcccacatcgactagaaatagaggaaatgttggatatataagagaggagacccatatatctaatgtcttaaggttttgg 19548241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 22062860 - 22062773
Alignment:
Q  186 ttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgcttcgtagactccccaaca 273  Q
    |||||||||||||||| |||| |||||||||  |||||||| | |||||||  |||||||||||||| ||| |   ||||||||||||    
T  22062860 ttttgggtaagagtgtggtgtttctctcttaacgggtcctaaatgtttagctcattgccgctccaagtgctccccggactccccaaca 22062773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 40053443 - 40053538
Alignment:
Q  75 attgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgt 170  Q
    |||||||| |||||||||||  | || ||||| ||||||| ||| |||||||| ||||||||||||| ||||||| |  ||||||| || ||||||    
T  40053443 attgttgggaatcaagtgtgaataattatgtcccacatcggctaaaaatggaggaaatgttggatatataagagagggaacccatatacttgatgt 40053538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 10066529 - 10066578
Alignment:
Q  75 attgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatg 124  Q
    |||||||||||||||||||| ||||| || |||||||||| |||||||||    
T  10066529 attgttggaaatcaagtgtgagtgattatatctcacatcggctagaaatg 10066578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 19547869 - 19547932
Alignment:
Q  86 tcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagaga 149  Q
    ||||||||| || || |||||| | ||||||||||||||||  ||||||||||||| |||||||    
T  19547869 tcaagtgtgagtaattatgtcttatatcgactagaaatggaagaaatgttggatatataagaga 19547932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 256
Target Start/End: Original strand, 13042985 - 13043158
Alignment:
Q  75 attgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtctta 174  Q
    |||||||||||||||| ||| |||||||| || |||||||||||||||| |||||||  |||||||| ||||||| ||||||||||||||     |||||    
T  13042985 attgttggaaatcaagagtgagtgataatctcccacatcgactagaaatagagcaaacattggatatataagagaggagacccataaacccatcatctta 13043084  T
Q  175 gggttttggtcttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgct 256  Q
    ||         |||||||||||||  | |||||||||||||||  |||||||||| ||||||| ||||| ||||||||||||    
T  13043085 gg--------attttgggtaagagattggtgtctctctcttagcaggtcctagacatttagcccattgctgctccaagcgct 13043158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 256
Target Start/End: Original strand, 13112981 - 13113154
Alignment:
Q  75 attgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtctta 174  Q
    |||||||||||||||| ||| |||||||| || |||||||||||||||| |||||||  |||||||| ||||||| ||||||||||||||     |||||    
T  13112981 attgttggaaatcaagagtgagtgataatctcccacatcgactagaaatagagcaaacattggatatataagagaggagacccataaacccatcatctta 13113080  T
Q  175 gggttttggtcttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgct 256  Q
    ||         |||||||||||||  | |||||||||||||||  |||||||||| ||||||| ||||| ||||||||||||    
T  13113081 gg--------attttgggtaagagattggtgtctctctcttagcaggtcctagacatttagcccattgctgctccaagcgct 13113154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 13112527 - 13112634
Alignment:
Q  76 ttgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttag 175  Q
    ||||||||||||||||||| |||||||| || |||||||||||||||| |||||||  || ||||| ||||||| ||||||||||||||   |||||||     
T  13112527 ttgttggaaatcaagtgtgagtgataatatcccacatcgactagaaatagagcaaacattagatatataagagaggagacccataaacccattgtcttaa 13112626  T
Q  176 ggttttgg 183  Q
    ||||||||    
T  13112627 ggttttgg 13112634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 13042529 - 13042617
Alignment:
Q  76 ttgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacc 164  Q
    ||||||||||||||||||| |||||||| || |||||||||||||||| |||||||  || ||||| ||||||| ||||||||||||||    
T  13042529 ttgttggaaatcaagtgtgagtgataatatcccacatcgactagaaatagagcaaacattagatatataagagaggagacccataaacc 13042617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 83 - 256
Target Start/End: Original strand, 13112245 - 13112410
Alignment:
Q  83 aaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggttttg 182  Q
    |||||||||||| || |||||||||||||| || ||||| |||||||||  || ||||| |||| || |||||||| |||||    ||||||| |||||     
T  13112245 aaatcaagtgtgagtaataatgtctcacattgattagaattggagcaaaaattagatatataagtgaggagacccaaaaacccatcgtcttagagttttt 13112344  T
Q  183 gtcttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgct 256  Q
    |        ||||||||||  |||||||||||||| |||||||||||||||| || |||| |||||||||||||    
T  13112345 g--------gtaagagtgtgatgtctctctcttagcgggtcctagacgtttaacccattgtcgctccaagcgct 13112410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 256
Target Start/End: Original strand, 13042251 - 13042416
Alignment:
Q  83 aaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggttttg 182  Q
    |||||||||||| || |||||||||||||| || |||||  ||||||||  || ||||| |||| || |||||||| |||||    ||||||| |||||     
T  13042251 aaatcaagtgtgagtaataatgtctcacattgattagaatcggagcaaaaattagatatataagtgaggagacccaaaaacccatcgtcttagagttttt 13042350  T
Q  183 gtcttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgct 256  Q
    |        ||||||||||  |||||||||||||| |||||||||||||||| || |||| |||||||||||||    
T  13042351 g--------gtaagagtgtgatgtctctctcttagcgggtcctagacgtttaacccattgtcgctccaagcgct 13042416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 269
Target Start/End: Original strand, 13112794 - 13112877
Alignment:
Q  186 ttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgcttcgtagactcccc 269  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||| ||||||| |||| |||| | |||||| |  |||||||||    
T  13112794 ttttgggtaagaatgtggtgtctctctcttagcgggtcctagacatttagcccattgtcgcttccagcgctccccagactcccc 13112877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 13042703 - 13042775
Alignment:
Q  77 tgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagaga 149  Q
    |||||||||||||||||| ||||| ||||  |||||| |||||||||||||||||  || ||||| |||||||    
T  13042703 tgttggaaatcaagtgtgagtgattatgtgccacatcaactagaaatggagcaaacattagatatataagaga 13042775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 13112701 - 13112773
Alignment:
Q  77 tgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagaga 149  Q
    |||||||||||||||||| ||||| ||||  |||||| |||||||||||||||||  || ||||| |||||||    
T  13112701 tgttggaaatcaagtgtgagtgattatgtgccacatcaactagaaatggagcaaacattagatatataagaga 13112773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 36389162 - 36389098
Alignment:
Q  76 ttgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggata 140  Q
    ||||||| ||||||||| | ||||||||||| |||||| |||||||||||||||||  |||||||    
T  36389162 ttgttgggaatcaagtgcgagtgataatgtcccacatcaactagaaatggagcaaacattggata 36389098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 36389346 - 36389277
Alignment:
Q  186 ttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgct 256  Q
    ||||||||||  ||||  ||||||||| |||||||||||| |||||||| || ||||||||||||||||||    
T  36389346 ttttgggtaacggtgtgatgtctctcttttagtgggtcctggacgtttaacc-attgccgctccaagcgct 36389277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 26420916 - 26420851
Alignment:
Q  76 ttgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatat 141  Q
    ||||||||| ||||||||| ||  | | ||| |||||||||||||||||||| |||||||||||||    
T  26420916 ttgttggaattcaagtgtgagtagttaagtcccacatcgactagaaatggaggaaatgttggatat 26420851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 5963681 - 5963780
Alignment:
Q  84 aatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggttttgg 183  Q
    ||||||||||| ||||| ||||| |||||||||||| ||||||| |||    |||||| ||||||| |  ||||||| | |||||| |||| ||||||||    
T  5963681 aatcaagtgtgtgtgattatgtcccacatcgactaggaatggaggaaacaaaggatatataagagagggaacccatagatctgatgccttaaggttttgg 5963780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 3455872 - 3455917
Alignment:
Q  82 gaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggag 127  Q
    ||||||||||||| |||||  |||||||||||||||| ||||||||    
T  3455872 gaaatcaagtgtgagtgattgtgtctcacatcgactataaatggag 3455917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 16143427 - 16143513
Alignment:
Q  75 attgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataa 161  Q
    |||||||||||||||||||| ||||||||||  ||||||  |||||||||||||||||||||||||| ||||||| |||||||||||    
T  16143427 attgttggaaatcaagtgtgagtgataatgttccacatctgctagaaatggagcaaatgttggatatataagagacgagacccataa 16143513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 53595950 - 53596038
Alignment:
Q  76 ttgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacc 164  Q
    ||||||||||||||||| | ||||| ||||| ||||| |||||||||| ||| ||||||||||||| ||||||| ||||||||||||||    
T  53595950 ttgttggaaatcaagtgcgagtgattatgtcccacattgactagaaatagagaaaatgttggatatataagagaggagacccataaacc 53596038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 53596265 - 53596353
Alignment:
Q  76 ttgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacc 164  Q
    ||||||||||||||||| | ||||| ||||| ||||| |||||||||| ||| ||||||||||||| ||||||| ||||||||||||||    
T  53596265 ttgttggaaatcaagtgcgagtgattatgtcccacattgactagaaatagagaaaatgttggatatataagagaggagacccataaacc 53596353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 43481588 - 43481671
Alignment:
Q  86 tcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatg 169  Q
    ||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||| ||||||| | |||||||| ||||||||    
T  43481588 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttggatatataagagaggggacccatatacctgatg 43481671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 40195983 - 40195895
Alignment:
Q  81 ggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatg 169  Q
    |||||||||||||| ||||| |||| ||||||||||||| ||||||| ||| ||||||||| ||||||| |||||||||| || |||||    
T  40195983 ggaaatcaagtgtgagtgattatgtttcacatcgactaggaatggaggaaacgttggatatataagagaggagacccatatacatgatg 40195895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 43978745 - 43978636
Alignment:
Q  75 attgttggaaa-tcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtctt 173  Q
    ||||||||||| ||||||||| ||||| ||||| |||||||||||| ||||||| |||  |||||||| ||||||| ||||| |||| ||||  || |||    
T  43978745 attgttggaaaatcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaacattggatatataagagaggagactcatatacctattgcctt 43978646  T
Q  174 agggttttgg 183  Q
    | ||||||||    
T  43978645 aaggttttgg 43978636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 48127982 - 48127895
Alignment:
Q  77 tgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacc 164  Q
    ||||||||||||| |||| ||||| ||||| |||||| |||| |||||| | ||| ||| ||||| ||||||| ||||||||||||||    
T  48127982 tgttggaaatcaaatgtgagtgattatgtcacacatcaactataaatggtggaaacgtttgatatataagagaggagacccataaacc 48127895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 32201028 - 32201108
Alignment:
Q  75 attgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagac 155  Q
    |||||||| |||||| |||| ||||| ||||||||||||||||| ||||| || ||||||| |||||  |||||| |||||    
T  32201028 attgttgggaatcaaatgtgagtgattatgtctcacatcgactaaaaatgaaggaaatgtttgatatacaagagaggagac 32201108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 277
Target Start/End: Complemental strand, 43978615 - 43978548
Alignment:
Q  210 tctcttagtgggtcctagacgtttagcctattgccgctccaagcgcttcgtagactccccaacaaggt 277  Q
    |||||||  |||||||||||||||| || |||||||||||||||||| |  ||||||| |||||||||    
T  43978615 tctcttaacgggtcctagacgtttaacccattgccgctccaagcgctccccagactccacaacaaggt 43978548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 48127668 - 48127605
Alignment:
Q  186 ttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctcc 249  Q
    ||||||||||| |||| |||||||||||||| ||| ||||||||||||| || |||||| ||||    
T  48127668 ttttgggtaagtgtgtggtgtctctctcttaatggatcctagacgtttaacccattgccactcc 48127605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 53596567 - 53596617
Alignment:
Q  186 ttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagc 236  Q
    |||| ||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  53596567 ttttaggtaagagtgtggtgtctctctcatagcgggtcctagacgtttagc 53596617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 48127874 - 48127819
Alignment:
Q  193 taagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctc 248  Q
    ||||||||| |||||| ||||||||  |||||||||||||||| | ||||||||||    
T  48127874 taagagtgtggtgtctttctcttagatggtcctagacgtttagtccattgccgctc 48127819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 54017708 - 54017666
Alignment:
Q  84 aatcaagtgtgcgtgataatgtctcacatcgactagaaatgga 126  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||    
T  54017708 aatcaagtgtgagtgattatgtctcacatcgactaggaatgga 54017666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 16143530 - 16143597
Alignment:
Q  186 ttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgct 256  Q
    |||||||||||||||||||||   |||||||  |||||||| | |||||  | ||||||||||||||||||    
T  16143530 ttttgggtaagagtgtagtgt---tctcttaacgggtcctaaatgtttaatccattgccgctccaagcgct 16143597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 17732073 - 17732021
Alignment:
Q  76 ttgttgga-aatcaagtgtgcgtgataatgtctcacatcgactagaaatggag 127  Q
    |||||||| ||||||||||| ||||| ||||| |||||||||||| |||||||    
T  17732073 ttgttggataatcaagtgtgagtgattatgtcccacatcgactaggaatggag 17732021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 19033304 - 19033252
Alignment:
Q  76 ttgttgga-aatcaagtgtgcgtgataatgtctcacatcgactagaaatggag 127  Q
    |||||||| ||||||||||| ||||| ||||| |||||||||||| |||||||    
T  19033304 ttgttggataatcaagtgtgagtgattatgtcccacatcgactaggaatggag 19033252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 29795939 - 29796011
Alignment:
Q  76 ttgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagag 148  Q
    ||||||||||||||||||  ||||| || |||||||||||||| ||||  || ||| ||| ||||| ||||||    
T  29795939 ttgttggaaatcaagtgttagtgattatatctcacatcgactaaaaataaagaaaacgttagatatataagag 29796011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 42059956 - 42059856
Alignment:
Q  83 aaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggttttg 182  Q
    |||||||||||| ||||| |||||| |||| || |||| || ||| || |||| ||||| ||||||| | ||| | || |||| |||||||| |||||||    
T  42059956 aaatcaagtgtgagtgattatgtcttacattgattagacatagaggaattgtttgatatataagagaggggacacttatacctaatgtcttaaggttttg 42059857  T
Q  183 g 183  Q
    |    
T  42059856 g 42059856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 5981607 - 5981503
Alignment:
Q  79 ttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggt 178  Q
    |||||||||||||||| ||||| ||||| |||||||||||| ||||||| ||| ||||||||| ||||||| | |||||||  |||||||| |||| |||    
T  5981607 ttggaaatcaagtgtgagtgattatgtcccacatcgactaggaatggagaaaacgttggatatataagagaggggacccatgtacctgatgccttaaggt 5981508  T
Q  179 tttgg 183  Q
    |||||    
T  5981507 tttgg 5981503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 18829908 - 18829838
Alignment:
Q  186 ttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgct 256  Q
    |||||| ||||||||| || ||| |||||||| ||||||||||||||||||| ||||||||||||||||||    
T  18829908 ttttggataagagtgtggtatctttctcttagcgggtcctagacgtttagcccattgccgctccaagcgct 18829838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 2954666 - 2954571
Alignment:
Q  86 tcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggtttt 181  Q
    ||||||||| ||||| ||||| ||||| |||||| ||||||| ||||||||||||| |||||||  |||||||||  ||||||| |||| ||||||    
T  2954666 tcaagtgtgagtgattatgtcccacatagactaggaatggagaaaatgttggatatataagagagaagacccatatgcctgatgccttaaggtttt 2954571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 3670940 - 3670881
Alignment:
Q  103 tgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaa 162  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||||    
T  3670940 tgtctcacatcgactagaaatggaggaaacgttggatatataagagatgagacccataaa 3670881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 2954383 - 2954309
Alignment:
Q  86 tcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccata 160  Q
    ||||||||| ||||| || || |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||    
T  2954383 tcaagtgtgagtgattatttcccacatcgactaggaatggagaaaatgttggatatataagagaggagacccata 2954309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 274
Target Start/End: Complemental strand, 3671289 - 3671119
Alignment:
Q  96 gtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggttttggtcttttgggtaa 195  Q
    ||||| ||||| |||||||||||| |||  || ||| ||||||||| ||||||| |||| ||||||||||  || |||||||||        |||| |||    
T  3671289 gtgattatgtcccacatcgactaggaatataggaaacgttggatatataagagaggagaaccataaacctactgccttagggtt--------ttggataa 3671198  T
Q  196 gagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgcttcgtagactccccaacaa 274  Q
     ||| | ||||||||||||||| ||||| ||||| ||| ||  |||||||||||| ||| | |  ||||||||||||||    
T  3671197 tagtttggtgtctctctcttagcgggtcttagacatttcgctcattgccgctccaggcgttccccagactccccaacaa 3671119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 5981893 - 5981813
Alignment:
Q  84 aatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacc 164  Q
    ||||||||||| | ||| ||||| |||||| | ||| ||||||| ||| ||||||||| ||||||| | ||||||||||||    
T  5981893 aatcaagtgtgagggattatgtcccacatcaattaggaatggaggaaacgttggatatataagagaggggacccataaacc 5981813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 29103370 - 29103302
Alignment:
Q  88 aagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacc 156  Q
    ||||||| || || |||||||||||||||||| ||||||| ||| |||| | || ||||||||| ||||    
T  29103370 aagtgtgagtaatcatgtctcacatcgactaggaatggaggaaacgttgaaaatataagagaagggacc 29103302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 15327851 - 15327953
Alignment:
Q  81 ggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggttt 180  Q
    |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| ||| ||||| ||||||| | |||||||| ||||| ||||||  |||||    
T  15327851 ggaaatcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttagatatataagagaggggacccatatacctgttgtcttgaggttt 15327950  T
Q  181 tgg 183  Q
    |||    
T  15327951 tgg 15327953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 4392355 - 4392253
Alignment:
Q  81 ggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggttt 180  Q
    |||||||||||||| ||||| |||||||||||||||||  ||||||| |||  |||||||| ||| ||| |||||||||| |||||||| |||| | |||    
T  4392355 ggaaatcaagtgtgagtgattatgtctcacatcgactatgaatggaggaaacattggatatataacagaggagacccatatacctgatgccttaagattt 4392256  T
Q  181 tgg 183  Q
    |||    
T  4392255 tgg 4392253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 237
Target Start/End: Complemental strand, 31973504 - 31973350
Alignment:
Q  75 attgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtctta 174  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||||||||||| ||  |||  |||| ||||||| || || |||| ||| |||| ||||    
T  31973504 attgttggaaatcaagtgtgagtgattatgtctcacaccgactagaaatggaggaaccgttacatatataagagaggatacacatatacccgatgcctta 31973405  T
Q  175 gggttttggtcttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcc 237  Q
     |         ||||||||||||||||  |||||||||||||| || | ||||||||||||||    
T  31973404 ag--------attttgggtaagagtgtgatgtctctctcttagcggattctagacgtttagcc 31973350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 26231511 - 26231596
Alignment:
Q  77 tgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaa 162  Q
    |||||||| ||||||||  |||||||| | ||||||| |||| |||||||| ||| ||||||||||||||||| ||| ||||||||    
T  26231511 tgttggaactcaagtgttagtgataatatttcacatcaactaaaaatggaggaaacgttggatatttaagagaggaggcccataaa 26231596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 242
Target Start/End: Complemental strand, 31973793 - 31973636
Alignment:
Q  77 tgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagg 176  Q
    |||||||||||||||||||||||| |||||  | |||||||| ||||| || |||  ||| | || ||||||| ||||| |||||| ||  |||||||      
T  31973793 tgttggaaatcaagtgtgcgtgattatgtccgatatcgactaaaaatgaaggaaacattgaaaatataagagaggagactcataaatctattgtcttaaa 31973694  T
Q  177 gttttggtcttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattg 242  Q
    |||||||       || |||| |||  |||||||||||||| ||||||||||| ||||||||||||    
T  31973693 gttttgg-------ggcaaga-tgtgttgtctctctcttagcgggtcctagacatttagcctattg 31973636  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 12466272 - 12466338
Alignment:
Q  75 attgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatat 141  Q
    |||||| ||||||||||||  ||||| ||||| |||||| ||||||||||||| ||| |||||||||    
T  12466272 attgttagaaatcaagtgtaagtgattatgtcccacatcaactagaaatggagaaaacgttggatat 12466338  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 34665978 - 34665912
Alignment:
Q  75 attgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatat 141  Q
    |||||||||||||| ||||| ||||| || || |||||||||||||||| ||| ||||||| |||||    
T  34665978 attgttggaaatcatgtgtgagtgattatatcccacatcgactagaaattgaggaaatgttagatat 34665912  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 249
Target Start/End: Complemental strand, 7301752 - 7301585
Alignment:
Q  76 ttgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttag 175  Q
    ||||||||||||||||||| || || ||||| ||||||||||| |||||||| ||||||| ||||| ||| ||| | ||| |||| |||| || |||||     
T  7301752 ttgttggaaatcaagtgtgagtaattatgtcccacatcgactaaaaatggagaaaatgttagatatataaaagaggggacacatatacctaatatcttaa 7301653  T
Q  176 ggttttggtcttttgggtaagagtgtagtgtct--ctctcttagtgggtcctagacgtttagcctattgccgctcc 249  Q
    |||       |||||||||||||| | ||||||   ||||||||| ||||||||| |||||||| |||| ||||||    
T  7301652 ggt-------ttttgggtaagagtttggtgtctaagtctcttagt-ggtcctagaggtttagcccattgtcgctcc 7301585  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 11637890 - 11637801
Alignment:
Q  75 attgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacc 164  Q
    ||||||| |||||||||||| |||||||||||  ||||||||||||| || ||||||  ||| |||| ||||||| || |||||||||||    
T  11637890 attgttgaaaatcaagtgtgagtgataatgtccaacatcgactagaagtgaagcaaacattgaatatataagagaggatacccataaacc 11637801  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 7301469 - 7301397
Alignment:
Q  75 attgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaaga 147  Q
    ||||||| |||| ||||||| ||||| ||||| |||||||||||||||||||| ||| ||||||||| |||||    
T  7301469 attgttgaaaattaagtgtgagtgattatgtcccacatcgactagaaatggaggaaacgttggatatataaga 7301397  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 11638079 - 11637973
Alignment:
Q  186 ttttgggtaagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgct-ccaagcgcttcgtagactccccaaca---aggtatca 281  Q
    |||||||||||||| | ||||||||||||| | |||||||||||||||| || ||| ||||| ||||||||| |  ||||||||||| |   ||||||||    
T  11638079 ttttgggtaagagtatggtgtctctctctttgcgggtcctagacgtttaacccattaccgctcccaagcgctcccaagactccccaagaaacaggtatca 11637980  T
Q  282 gagcctg 288  Q
    |||||||    
T  11637979 gagcctg 11637973  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 286
Target Start/End: Original strand, 15092081 - 15092253
Alignment:
Q  108 cacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggttttggtcttttgggtaagagtgtagtgtc 207  Q
    |||||||| ||||||| ||| ||||||||||||| || |||| | || ||||| ||||||||  ||| |||||| |        |||| |||||  ||||    
T  15092081 cacatcgattagaaattgagaaaatgttggatatatacgagaggggatccatatacctgatgctttaaggttttag--------gtaatagtgtgatgtc 15092172  T
Q  208 tctctcttagtgggtcctagacgtttagcctattgccgctccaagcgcttcgtagactccccaacaa--ggtatcagagcc 286  Q
    |||||||||| |||| || || |||||| | | ||||||||| |||||||   ||||||||||||||  ||||||||||||    
T  15092173 tctctcttagcgggttcttgatgtttagtccactgccgctcctagcgctttccagactccccaacaactggtatcagagcc 15092253  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 6250081 - 6250139
Alignment:
Q  83 aaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatat 141  Q
    |||||||||||| ||||| ||||| |||||||| || | |||||| |||||||||||||    
T  6250081 aaatcaagtgtgagtgattatgtcccacatcgattaaacatggaggaaatgttggatat 6250139  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 21297294 - 21297238
Alignment:
Q  83 aaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggat 139  Q
    |||||||||||| |||||  |||| |||||||||||| ||||||  |||||||||||    
T  21297294 aaatcaagtgtgagtgattgtgtcccacatcgactaggaatggaaaaaatgttggat 21297238  T

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Target: scaffold0256 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 13360 - 13448
Alignment:
Q  77 tgttggaaatcaagtgtgcgtgataatgtctcacatcgactagaaatggagcaaatgttggatatttaagagaagagacccataaacct 165  Q
    ||||||||||||||||||  |||| | ||| |||||||||||||||||||| ||||||| ||| |  |||||| | |||||||| ||||    
T  13360 tgttggaaatcaagtgtgaatgattaagtcacacatcgactagaaatggaggaaatgttagatttaaaagagaggtgacccatatacct 13448  T

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Target: scaffold0548 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 4231 - 4129
Alignment:
Q  82 gaaatcaagtgtgcgtgataatgtctcacatcgactagaaatgga-gcaaatgttggatatttaagagaagagacccataaacctgatgtcttagggttt 180  Q
    ||||| ||||||| |||||  |||||||||||||||| ||||||| | ||||||||||||| | ||||| | ||| |||| |||| ||||||||  ||||    
T  4231 gaaattaagtgtgagtgattgtgtctcacatcgactataaatggaggaaaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttt 4132  T
Q  181 tgg 183  Q
    |||    
T  4131 tgg 4129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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