View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4744-Insertion-1 (Length: 990)
Name: NF4744-Insertion-1
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4744-Insertion-1 |
 | |
|
| [»] scaffold0777 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 8 - 651
Target Start/End: Complemental strand, 8284858 - 8284216
Alignment:
| Q |
8 |
actacttcattaatatgattctccacagggaaagagaaaaatgggggtgtaggtagttgtaaatcggtttcagtagggatgcgaaaataagcatcaactt |
107 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
8284858 |
actacttcattaatatgattctgcacagggaaagagaaaaatgggggtgtaggtagttgtaaatcggttccagtaggggtttgaaaataagcatcaactt |
8284759 |
T |
|
| Q |
108 |
ggttttggttcacggacaccgcgggtgaattagaaaacaccgccatcccatcattagcattagagtatccaatattgttcgaaattacaatttcatcggg |
207 |
Q |
| |
|
||||||||||||| || || ||||||||||||||||||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
8284758 |
ggttttggttcaccgagactgcgggtgaattagaaaacaccaccatcccatcattagcattggagaatccgatattgttcgaaattacaatttcatcggg |
8284659 |
T |
|
| Q |
208 |
agaggctttttgatgaccagaagaagatgatgatgaggagttgggtggtgatgtgagtgtttgatgaccagagttttgttgtgtttctcgtttcttgttg |
307 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8284658 |
agaagctttttgatgaccagaagaagatgatgatgatgagttgggtggtgatgtgagtgtttgatgaccagagttttgttgtgtttctcgtttcttgttg |
8284559 |
T |
|
| Q |
308 |
tggatgaatcttttcttttgtttgcttcgagacttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttgtaatcgttcac |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8284558 |
tggatgaatcttttcttttgtttgcttcgagacttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttgtaattgttcac |
8284459 |
T |
|
| Q |
408 |
gtatcttcgtaatttcctcccttggtgggttcaccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttccatcttggctt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8284458 |
gtatcttcgtaatttcctcccttggtgggttcaccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttccatcttggctt |
8284359 |
T |
|
| Q |
508 |
tggttctggagttctctcttcgccatctccacctaaacaatatttgttataagtcaatcaaacatgctaaagtttacaaattctaaaatttactaataga |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8284358 |
tggttctggagttctctcttcgccatctccacctaaacaatatttgttataagtcaatcgaacatgct-aagtttacaaattctaaaatttactaataga |
8284260 |
T |
|
| Q |
608 |
tgttcattatattgtataaactagggtgtattatgatatttcta |
651 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8284259 |
tgttcattatattgtataaactagggagtattatgatatttcta |
8284216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 715 - 893
Target Start/End: Complemental strand, 8284151 - 8283965
Alignment:
| Q |
715 |
gacaatatgaactatcataatttctttttaagtttatatc-aaactg-aaaatttgtaaactac-atatgaac-atggagtatcataatatttctataaa |
810 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
8284151 |
gacaatatgaactatcataatttttttttaagtttatatcaaaactgaaaaatttgtaaactacaatatgaacaatggagtatcataatatttctataaa |
8284052 |
T |
|
| Q |
811 |
ac-attggataaattatcttcatctgttgctttggtttacaatccttagtgta-ccattaaa--catgacagaaactacaatagaaa |
893 |
Q |
| |
|
|| ||||||||| |||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
8284051 |
acaattggataagttatcttcatctcttgctttggtttataatccttagtgtatacattaaaacaatgacagaaactacaatagaaa |
8283965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 3e-54; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 339 - 651
Target Start/End: Complemental strand, 34694601 - 34694290
Alignment:
| Q |
339 |
acttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttgtaatcgttcacgtatcttcgtaatttcctcccttggtgggtt |
438 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||| ||||| |||| |||| |||||||||||||| |||| || || || |||| || |
|
|
| T |
34694601 |
acttgcggttttgaaaccagtaaaagacactggaatcaccaacttggccaaattcttctaattgttcacgtatcttcttaatctcatctctacgtggatt |
34694502 |
T |
|
| Q |
439 |
caccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttccatcttggctttggttctggagttctctcttcgccatctcca |
538 |
Q |
| |
|
| | |||||||||| | |||||||| |||||| | ||||| | ||||||||| ||||||||||| ||||| | |||||| | ||||| |||||||| |
|
|
| T |
34694501 |
cgtcgtccctgagttatagatggcttcaagaatgtggatttgctcaggttttgggatccatcttggccttggtccaggagttatttcttcatcatctcca |
34694402 |
T |
|
| Q |
539 |
cctaaacaatatttgttataagtcaatcaaacatgctaaagtttacaaattctaaaatttactaatagatgttcattatattgtataaactagggtgtat |
638 |
Q |
| |
|
|||||| ||||||||| |||| | ||||||||||| |||||||||||||| ||||||| || | |||| ||||||| ||||||| ||| | || |||| |
|
|
| T |
34694401 |
cctaaaaaatatttgtcgtaagccgatcaaacatgc-aaagtttacaaattataaaattgaccgaaagatattcattacattgtatgaaccatggagtat |
34694303 |
T |
|
| Q |
639 |
tatgatatttcta |
651 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34694302 |
tatgatatttcta |
34694290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 338 - 589
Target Start/End: Complemental strand, 34686670 - 34686426
Alignment:
| Q |
338 |
gacttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttgtaatcgttcacgtatcttcgtaatttcctcccttggtgggt |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||| ||| ||||| ||||||||| |||| ||||||||| | ||||| || ||||| | |
|
|
| T |
34686670 |
gacttgcggttttgaaaccagtaaaagacactcgcatcaccaatttgtccaaattcttgtaattgttctcgtatcttcttgatttcatctacaggtggat |
34686571 |
T |
|
| Q |
438 |
tcaccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttccatcttggctttggttctggagttctctcttcgccatctcc |
537 |
Q |
| |
|
|| ||||||||||||| | |||||||| |||||||| ||||| | || ||||| ||||||||||| ||||| | ||| |||| |||| ||| | |
|
|
| T |
34686570 |
tcttcatccctgagttgtagatggcttcaagaatgcggatttgctcaggctttggaatccatcttggccttggtccaggatttctatctt---cat---c |
34686477 |
T |
|
| Q |
538 |
acctaaacaatatttgttataagtcaatcaaacatgctaaagtttacaaatt |
589 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
34686476 |
gcctaaacaatatttgttataagccgatcaaacatgc-aaagtttacaaatt |
34686426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 277 - 414
Target Start/End: Complemental strand, 34682484 - 34682347
Alignment:
| Q |
277 |
agagttttgttgtgtttctcgtttcttgttgtggatgaatcttttcttttgtttgcttcgagacttgcggttttgaaaccagtaaaagacattggcatca |
376 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | || |||||||||||||||||||| || || |||||||||||||||||| | ||||| || || |
|
|
| T |
34682484 |
agagttttgttgtgtttttagtttcttgttgtacaagattcttttcttttgtttgcttctggagttacggttttgaaaccagtaagaaacattaacagca |
34682385 |
T |
|
| Q |
377 |
ccaacttgaccaaactcttgtaatcgttcacgtatctt |
414 |
Q |
| |
|
|||||||| |||||| |||||| | ||||| ||||||| |
|
|
| T |
34682384 |
ccaacttgtccaaacccttgtagttgttcatgtatctt |
34682347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 34694900 - 34694753
Alignment:
| Q |
16 |
attaatatgattctccacagggaaagagaaaaatgggggtgtaggtagttgtaaatcggtttcagtagggatgcgaaaataagcatcaacttggttttgg |
115 |
Q |
| |
|
||||||||||||||| || ||||||||| |||||||||||||||||||||||| | ||||| |||| || || || ||||| |||| |||| |||||| |
|
|
| T |
34694900 |
attaatatgattctcaaccgggaaagaggaaaatgggggtgtaggtagttgtagaccggttccagtgagggtgtgaggataagtatcatcttgattttgg |
34694801 |
T |
|
| Q |
116 |
ttcacggacaccgcgggtgaattagaaaacaccgccatcccatcatta |
163 |
Q |
| |
|
|||| || | ||||||||||||| | || | |||||||||||||| |
|
|
| T |
34694800 |
ttcagagatattgcgggtgaattaggcaccatcaccatcccatcatta |
34694753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 34686977 - 34686910
Alignment:
| Q |
13 |
ttcattaatatgattctccacagggaaagagaaaaatgggggtgtaggtagttgtaaatcggtttcag |
80 |
Q |
| |
|
|||||||||||||||||| || ||||||||| ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
34686977 |
ttcattaatatgattctcaaccgggaaagagggaaatgggggtgtaggtagttgtagaccggtttcag |
34686910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 651
Target Start/End: Complemental strand, 34681286 - 34681221
Alignment:
| Q |
586 |
aattctaaaatttactaatagatgttcattatattgtataaactagggtgtattatgatatttcta |
651 |
Q |
| |
|
|||| ||||||| ||| | ||||||||||||||||||| |||||| || |||||| |||| ||||| |
|
|
| T |
34681286 |
aattataaaattcactgaaagatgttcattatattgtacaaactatggagtattacgatacttcta |
34681221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 488 - 525
Target Start/End: Complemental strand, 34681338 - 34681301
Alignment:
| Q |
488 |
tttgggttccatcttggctttggttctggagttctctc |
525 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
34681338 |
tttgggttccatctaggctttggttttggagttctctc |
34681301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 62; Significance: 3e-26; HSPs: 2)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 395 - 560
Target Start/End: Complemental strand, 5781 - 5617
Alignment:
| Q |
395 |
tgtaatcgttcacgtatcttcgtaatttcctcccttggtgggttcaccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggt |
494 |
Q |
| |
|
|||||| ||||| ||||||| |||| || || ||| |||| |||||||||||||||||||| | | ||||||||||||| ||||| | | ||||| | |
|
|
| T |
5781 |
tgtaattgttcatgtatcttattaatctcatctctttgtggattcaccatccctgagttgaagaggacttcgagaatgcggatttgctcaagctttggat |
5682 |
T |
|
| Q |
495 |
tccatcttggctttggttctggagttctctcttcgccatctccacctaaacaatatttgttataag |
560 |
Q |
| |
|
||||||||||||||| || | |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5681 |
tccatcttggctttg-ttgagaagttctctcttcagcatctccacctaaacaatatttgttataag |
5617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 380
Target Start/End: Complemental strand, 6181 - 6081
Alignment:
| Q |
280 |
gttttgttgtgtttctcgtttcttgttgtggatgaatcttttcttttgtttgcttcgagacttgcggttttgaaaccagtaaaagacattggcatcacca |
379 |
Q |
| |
|
|||| ||||||||||| || ||||||||| | || ||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||||||||| |
|
|
| T |
6181 |
gtttggttgtgtttctggtctcttgttgtaggggattcttttcttttgtatgcttatggacttgcggttttgaaacgagtaaaagacgctagcatcacca |
6082 |
T |
|
| Q |
380 |
a |
380 |
Q |
| |
|
| |
|
|
| T |
6081 |
a |
6081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 341 - 528
Target Start/End: Complemental strand, 4393502 - 4393315
Alignment:
| Q |
341 |
ttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttgtaatcgttcacgtatcttcgtaatttcctcccttggtgggttca |
440 |
Q |
| |
|
||||||||||| ||||| || || ||||| |||||||||||||||||| ||||||| || || | | |||||| | ||||| || |||||||| |||| |
|
|
| T |
4393502 |
ttgcggttttggaaccaatagaaaacattagcatcaccaacttgaccatactcttgcaactgtgccctaatcttccttatttcttctcttggtggattca |
4393403 |
T |
|
| Q |
441 |
ccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttccatcttggctttggttctggagttctctcttc |
528 |
Q |
| |
|
|||| || || ||||| || ||||| || ||||| ||||||| ||||||||| ||||| ||||||||||| || ||| |||||||||| |
|
|
| T |
4393402 |
ccattccagaattgaagatagcttcaagtatgcggatttgttctggttttggattccaccttggctttggctcaggacttctctcttc |
4393315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University