View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4744-Insertion-10 (Length: 308)
Name: NF4744-Insertion-10
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4744-Insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 27286111 - 27285902
Alignment:
| Q |
8 |
aaatatgcaaaatgacaaactttgtttctattcttggcaatctcattccaacattcaaagccactcaaacatcacacaataaaacaaagttaacttaaca |
107 |
Q |
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| T |
27286111 |
aaatatgcaaaatgacaaactttgtttctattcttggcaatctcattccaacattcaaagccactcaaacatcacacaataaaacaaagttaacttaaca |
27286012 |
T |
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| Q |
108 |
acaacctcaatttgcttcatcactcattcatactcacaaacacaaaaacaaagttaatactagtaccattgaaaaccattgaagcattaaaaggttatgg |
207 |
Q |
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| T |
27286011 |
acagcctcaatttgcttcatcac----tcatactcacaaacacaaaaacaaagttaatactagtaccattgaaaaccattgaagcattaaaaggttatgg |
27285916 |
T |
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| Q |
208 |
cttttcttctacca |
221 |
Q |
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|||||||||||||| |
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| T |
27285915 |
cttttcttctacca |
27285902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 308
Target Start/End: Complemental strand, 27285871 - 27285816
Alignment:
| Q |
253 |
aaatccaaagacaaagtccttcaccgaactctttcatcactaaaaccgacttcaca |
308 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||| |
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| T |
27285871 |
aaatccaaagacaaactccttcaccaaactctttcatcactaaaacccacttcaca |
27285816 |
T |
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