View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4744-Insertion-3 (Length: 817)
Name: NF4744-Insertion-3
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4744-Insertion-3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 464 - 780
Target Start/End: Original strand, 46775630 - 46775946
Alignment:
| Q |
464 |
ccaaggtggtattggctaggtctatttgcaatttttgcacaatacctcacaattcaaagatattaaacatcaatgacaaatatcctccagctctcagann |
563 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46775630 |
ccaaggtggcattgggtaggtctatttgcaacttttgcacaatacctcacaatccaaagatattaaacatcaatgaaaaatatcctccagctctcagatt |
46775729 |
T |
|
| Q |
564 |
nnnnnctttgaaaaggatacatggataaggactcggagcagaactgaaaatcttcttctgtaattctcagaggaaaagaatggtacatggtctatatgtg |
663 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46775730 |
tttttctttgaaaaggatacatggataaggactcgaagcagaactgaaaatcttcttatgtaattctcagaggaaaagaatggtacatggtctatatgtg |
46775829 |
T |
|
| Q |
664 |
catgttgagttgtgagggagtctaaaatatagaggcacgttgagctatgaacaacaacatggttgacaccaaatatttacacaaaaccttaaaatattag |
763 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46775830 |
catgttgagttgtgagggagtctaaaatatagaggcacgttgagctatgaacaacaacatggttgacaccaaatatttacacaaaaccttaaaatattag |
46775929 |
T |
|
| Q |
764 |
gtatgtaaatccccctc |
780 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
46775930 |
gtatgtaaatccccctc |
46775946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 46775174 - 46775362
Alignment:
| Q |
8 |
tcaataatctcccacttgtgtagatcccaaccgtaaatagacaataaatgtagagtagaactctaaaaatcatgacttcaatgtttttgctctccattct |
107 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46775174 |
tcaataatctctcatttgtgtagatctcaaccgtaaatagacaataaatgtagagtagaactctaaaaatcatgacttcaatgtttttgctttccattct |
46775273 |
T |
|
| Q |
108 |
ttctcctcgttgtaacttgttagtttatctttcactttctcttatttttctttggtgtatgctctagactactcctcgtaccattttgg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46775274 |
ttctcctcgttgtaacttgttagtttatctttcactttctcttatttttctttggtgtatgctctagactactcctcataccattttgg |
46775362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 266 - 382
Target Start/End: Original strand, 46775432 - 46775548
Alignment:
| Q |
266 |
cagaagtaatcaactgaaaaactagcctgaattaaaatagccccaccaaggaccaccacacgaacctcagcttaataaaggggaaacaaatttcaaatac |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46775432 |
cagaagtaatcaactgaaaaactagcctgaattaaaatagccccaccaaggaccaccacacgaacctcagcttaataaaggggaaacaaatttcaaatac |
46775531 |
T |
|
| Q |
366 |
aaagaaatgctagattc |
382 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
46775532 |
aaggaaatgctagattc |
46775548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University