View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4744-Insertion-4 (Length: 748)

Name: NF4744-Insertion-4
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4744-Insertion-4
NF4744-Insertion-4
[»] chr3 (1 HSPs)
chr3 (8-748)||(43489071-43489821)


Alignment Details
Target: chr3 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 8 - 748
Target Start/End: Complemental strand, 43489821 - 43489071
Alignment:
Q  8 gtgattagggcttcttctgtggcttctcatctacaatcttcatcatcgtcgccagcttcttctttgtcatcatcttcttctgcatttgtttcttctatgc 107  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489821 gtgattagggcttcttctatggcttctcatctacaatcttcatcatcgtcgccagcttcttctttgtcatcatcttcttctgcatttgtttcttctatgc 43489722  T
Q  108 agggcaatacttcagtttcctcgtatttttctactcagttgccaccttggtctacttcggatcatagctcttctccttcttgatgattaattttcaatga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43489721 agggcaatacttcagtttcctcgtatttttctactcagttgccaccttggtctacttcggatcagagctcttctccttcttgatgattaattttcaatga 43489622  T
Q  208 atcagaggcaaaaacatggataccaaacacgatactgataca------cctgtctgaagtgtcaatgctacatcgtccatttttatctggtgtaattttt 301  Q
    |||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43489621 atcacaggcaaaaacatggataccaaacacgatactgatactgatacgcctgtctgaagtgtcgatgctacatcgtccatttttatctggtgtaattttt 43489522  T
Q  302 ggataccaaacacgatactgatattgatacgcctgcccgaagtgtcattgctacatcctccatttttatctggtgtaattttcttgaatttagatcatgt 401  Q
    ||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43489521 ggataccaaacacgatattgatactgatacgcctgtccgaagtgtcaatgctacatcgtccatttttatctggtgtaattttcttgaatttagatcatgt 43489422  T
Q  402 ggaccttctgctgctgaagatccaaacacaaatttgctcttttattacattttatatttccaatagctaatgcaattcattcacaattcatgacattttt 501  Q
    | |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  43489421 gcacctcctcctgctgaagatccaaacacaaatttgctcttttattacattttatatttccaata-ctaatgcaattcattcgcaattcatgacattttt 43489323  T
Q  502 tgtggtgataatgtttctagaaatgcaaattttaatttttctttgttagatagtagtactcaatatttgaaagaaatttgattccctaccaattggagta 601  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489322 tgtggtgataatttttctagaaatgcaaattttaatttttctttgttagatagtagtactcaatatttgaaagaaatttgattccctaccaattggagta 43489223  T
Q  602 attgtatttagtttgcaagttatgttccattgttttgaaattttgaaagtggcacgttagcgacatcata-----acatgacaagagaataatgtgtttg 696  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||    
T  43489222 attgtatttagtttgcaagctatgttccattgttttgaaattttgaaagtggcacgttagcgacatcataacataacatgacaagagaataatgtgtttg 43489123  T
Q  697 accatttgtattcatgtaacgaggtcttcttctaccaattcttttctcacta 748  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489122 accatttgtattcatgtaacgaggtcttcttctaccaattcttttctcacta 43489071  T

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