View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4744-Insertion-5 (Length: 673)
Name: NF4744-Insertion-5
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4744-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 320 - 645
Target Start/End: Original strand, 30726188 - 30726510
Alignment:
| Q |
320 |
tatttttattaatgttcccatttttgctattcaacctttgaagctgataatttggatacnnnnnnnnnccaaaggttgttagtttgattcatggcgggtt |
419 |
Q |
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| T |
30726188 |
tatttttattaatgttcccatttttgctattcaacctttgaagctcataatttggatactttttttt-ccaaaggttgttagtttgattcatgg--ggtt |
30726284 |
T |
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| Q |
420 |
attctcttttgttcaatatatcttgcttataaaagaaaagtttgaaactatggtagataagttttaaagacaa-ttagaaaattgataagttcgacctac |
518 |
Q |
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| T |
30726285 |
attctcttttgttcaatatatcttgcttataaaagaaaagtttgaaactatggtagataagttttaaagacaatttagaaaattgataagttcgacctac |
30726384 |
T |
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| Q |
519 |
aaaattttctcaatgnnnnnnnagaggagttttttcaatgttaaatgcaataaccaatttacaaaattgataaatggataataaaaaattgagttgagga |
618 |
Q |
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| T |
30726385 |
aaaattttctcaatgtttttttagtggagttttttcaatgttaaatgcaataaccaatttacaaaattgataaatacaaaataaaaaattgagttgagga |
30726484 |
T |
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| Q |
619 |
gctaattcgggaaaacaataaaagcag |
645 |
Q |
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| T |
30726485 |
gctaattc-ggaaaacaataaaagcag |
30726510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 328
Target Start/End: Original strand, 30725426 - 30725759
Alignment:
| Q |
8 |
acatgaggcaccttacgtattcacgaagttatcaattatgtgctgcgacagaaacaacattatggcagagttatttgggattctatacagtttgcagctg |
107 |
Q |
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| T |
30725426 |
acatgaggcaccttacgaattcaccaagttatcaattatgtgctgcgacagaaacaacattatggcagagttatttgggattctatacagtttgcagctg |
30725525 |
T |
|
| Q |
108 |
attgtcgaacaaaggtttgtcccatgttgtgactgaaaccgattccggggaagttttgac--------------------ttgctaatcatcgttcgtcg |
187 |
Q |
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| T |
30725526 |
attgtcgaac-aaggtttgtccaatgttgtgactgaaaccgattccggggaggttttgactattatgcagacctgttgtgttcctaatcatcgttggtcg |
30725624 |
T |
|
| Q |
188 |
acttgcaattgcaaagatacaaatactctagttaagatgattggttgtgtggagggaacttattcctcaagnnnnnnnntcaagtcgctgacacttttgc |
287 |
Q |
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| T |
30725625 |
ac------ttgcaaagatacaaatactctagttaagatgattggttgtgtggagggaacttattcctcaagaaaaaaaatcaagtcgcagacacttttgc |
30725718 |
T |
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| Q |
288 |
caaagagcgtttaaacagcagatgaagatgcatatttttat |
328 |
Q |
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| T |
30725719 |
caaagagggtttaaacagcagatgaagatgcatatttttat |
30725759 |
T |
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