View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4744-Insertion-7 (Length: 520)

Name: NF4744-Insertion-7
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4744-Insertion-7
NF4744-Insertion-7
[»] chr1 (2 HSPs)
chr1 (97-500)||(15322024-15322425)
chr1 (31-105)||(15321368-15321442)
[»] chr2 (1 HSPs)
chr2 (286-373)||(1326187-1326274)
[»] chr8 (2 HSPs)
chr8 (337-404)||(33101825-33101892)
chr8 (310-411)||(13818782-13818883)
[»] chr5 (3 HSPs)
chr5 (336-415)||(17827185-17827264)
chr5 (357-415)||(39965308-39965367)
chr5 (355-411)||(30632530-30632586)
[»] chr6 (2 HSPs)
chr6 (310-415)||(6541963-6542065)
chr6 (311-407)||(2396755-2396851)
[»] chr3 (1 HSPs)
chr3 (337-397)||(46621523-46621583)
[»] chr4 (1 HSPs)
chr4 (324-411)||(17349547-17349633)


Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 97 - 500
Target Start/End: Original strand, 15322024 - 15322425
Alignment:
Q  97 taacaagtactagataataacgttagaccacggggacctgactgtgtcaaccacaacaataatggtcagggtaggagttaccactaacaatgtagtgggt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| |||||| |||||||||||    
T  15322024 taacaagtactagataataacgttagaccacggggacctgactgtgtcaaccacaaatataa-ggtcagggtaggagttactactaactatgtagtgggt 15322122  T
Q  197 ccattacattatggaattggactttgatagtttgagccaacttatggtagtaagttgagagccactttactatttggtttcattttaaacaccttctttt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15322123 ccattacattatggaattggactttgatagtttgagccaacttatggtagtaagttgagagccactttactatttggtttcattttaaacacattctttt 15322222  T
Q  297 tccgtcttattgcgtttctcgcgtgctttatgtaatttggattataaaattcaaacgacataaacactttataaaatctatcaaaacatgttaaaatatt 396  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  15322223 tccgtcttattgcgtttctcgcgtgcattatgtaatttggattataaaattcaaacgacataaacactttataaaatctatcaaaatacgttaaaatatt 15322322  T
Q  397 ttgaattttaaaatctgaagcagacacatgagaaatttcatagaatagaaaaagtagctgccttcattttactattacacttactttctctttgtcacac 496  Q
    |||||||||| |||||||| | ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15322323 ttgaattttagaatctgaaccggacgcatgagaaattt-atagaatagaaaaagtagctgtcttcattttactattacacttactttctctttgtcacac 15322421  T
Q  497 atct 500  Q
    ||||    
T  15322422 atct 15322425  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 15321368 - 15321442
Alignment:
Q  31 cctcaccgaaaatttcacgatggttatatgtaaatgcggaaatctcatcaataaccaaatagaggctaacaagta 105  Q
    ||||||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15321368 cctcaccaaaaatttcgcggtggttacatgtaaatgcggaaatctcatcaataaccaaatagaggctaacaagta 15321442  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 373
Target Start/End: Original strand, 1326187 - 1326274
Alignment:
Q  286 caccttctttttccgtcttattgcgtttctcgcgtgctttatgtaatttggattataaaattcaaacgacataaacactttataaaat 373  Q
    ||||||||||||||||| ||||| |||||||||| | ||| |||||||||||||||||||||  |||| |||||||||| ||||||||    
T  1326187 caccttctttttccgtcctattgagtttctcgcgcgttttttgtaatttggattataaaattagaacggcataaacactctataaaat 1326274  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 33101892 - 33101825
Alignment:
Q  337 attataaaattcaaacgacataaacactttataaaatctatcaaaacatgttaaaatattttgaattt 404  Q
    |||||| ||||||||||||||||| | |  |||||| || |||||||||||||||||| |||||||||    
T  33101892 attatataattcaaacgacataaatattccataaaaactttcaaaacatgttaaaataatttgaattt 33101825  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 411
Target Start/End: Complemental strand, 13818883 - 13818782
Alignment:
Q  310 gtttctcgcgtgctttatgtaatttggattataaaattcaaacgacataaacactttataaaatctatcaaaacatgttaaaatattttgaattttaaaa 409  Q
    |||||||||| | | |||||| || |||||||| ||| |||||  |||||||||   ||| || | | ||||||| ||| ||||||||||||||||||||    
T  13818883 gtttctcgcgcgttctatgtagttcggattatagaatccaaacttcataaacaccccatataaaccaccaaaacacgttgaaatattttgaattttaaaa 13818784  T
Q  410 tc 411  Q
    ||    
T  13818783 tc 13818782  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 415
Target Start/End: Complemental strand, 17827264 - 17827185
Alignment:
Q  336 gattataaaattcaaacgacataaacactttataaaatctatcaaaacatgttaaaatattttgaattttaaaatctgaa 415  Q
    ||||||||||| | ||||||||  ||||  |||||||||  ||||||||||||||||||||||| |||||| || |||||    
T  17827264 gattataaaatccgaacgacattgacaccctataaaatccttcaaaacatgttaaaatattttggattttacaaactgaa 17827185  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 415
Target Start/End: Complemental strand, 39965367 - 39965308
Alignment:
Q  357 taaacactttataaaa-tctatcaaaacatgttaaaatattttgaattttaaaatctgaa 415  Q
    |||||||| ||||||| ||| | ||||||| ||||||||||| |||||||||||||||||    
T  39965367 taaacactctataaaaatctctaaaaacatattaaaatatttcgaattttaaaatctgaa 39965308  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 30632586 - 30632530
Alignment:
Q  355 cataaacactttataaaatctatcaaaacatgttaaaatattttgaattttaaaatc 411  Q
    |||||||||||||||||||    ||||| | |||||||||||||| |||||||||||    
T  30632586 cataaacactttataaaattctccaaaatacgttaaaatattttggattttaaaatc 30632530  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 415
Target Start/End: Original strand, 6541963 - 6542065
Alignment:
Q  310 gtttctcgcgtgctttatgtaatttggattataaaattcaaacgacataaacactttataaaatctatcaaaa-catgttaaaatattttgaattttaaa 408  Q
    |||||||||| || ||||||| || |||||||||||| | |||   ||||| |||  ||||||||| |||||| || ||||||||||||||||||||| |    
T  6541963 gtttctcgcgcgccttatgtagttcggattataaaatccgaac---ataaatactccataaaatct-tcaaaagcacgttaaaatattttgaattttaga 6542058  T
Q  409 atctgaa 415  Q
    |||||||    
T  6542059 atctgaa 6542065  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 407
Target Start/End: Complemental strand, 2396851 - 2396755
Alignment:
Q  311 tttctcgcgtgctttatgtaatttggattataaaattcaaacgacataaacactttataaaatctatcaaaacatgttaaaatattttgaattttaa 407  Q
    |||||| || |||||||| | ||| ||||||| ||||| || |||||||||||  ||||||| |   ||||| | |||||||||||||| |||||||    
T  2396851 tttctcacgcgctttatgcagtttagattatagaattcgaatgacataaacaccctataaaaacctacaaaatacgttaaaatattttggattttaa 2396755  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 397
Target Start/End: Original strand, 46621523 - 46621583
Alignment:
Q  337 attataaaattcaaacgacataaacactttataaaatctatcaaaacatgttaaaatattt 397  Q
    |||||||||||||||| |||||||||| |||||||||||  ||||| |  |||||||||||    
T  46621523 attataaaattcaaacaacataaacaccttataaaatcttccaaaatacattaaaatattt 46621583  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 411
Target Start/End: Complemental strand, 17349633 - 17349547
Alignment:
Q  324 ttatgtaatttggattataaaattcaaacgacataaacactttataaaatctatcaaaacatgttaaaatattttgaattttaaaatc 411  Q
    ||||||| ||||||||||| |||| ||||| |||||||||| ||| ||| || |||||| ||||||||| ||||  ||||||| ||||    
T  17349633 ttatgtagtttggattatagaatttaaacgtcataaacactctat-aaacctttcaaaatatgttaaaacatttcaaattttagaatc 17349547  T

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