View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4744-Insertion-8 (Length: 431)
Name: NF4744-Insertion-8
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4744-Insertion-8 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 8 - 431
Target Start/End: Complemental strand, 27849134 - 27848711
Alignment:
| Q |
8 |
ccatttgtaggaatttctcatcttcagcacgatagttctcagcttctcgaatcaactttttaatttcttctgctgatagcctttctttgtaattagtaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27849134 |
ccatttgtaggaatttctcatcttcatcacggtggttctcagcttcttgaatcaactttttaatttcttctgttgatagcctttctttgtaattagtaat |
27849035 |
T |
|
| Q |
108 |
tataatctcatttgtactgccagtggatacttccttggcagcaactgtcaatgtaccgtttccatcaattgtaaaacatacatcaaaaggatggccgcgg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27849034 |
tataatctcatttgtactgccagtggatacttccttggcagcaactgtcaatgtaccgtttccatcaattgtaaaacatacatcaaaaggatggccgcga |
27848935 |
T |
|
| Q |
208 |
agggcaggagggaatccagagagagtaaaagagccaagccgattgttgtcactggccttagttctctccccctcataaacactgatcaaggcagaggatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27848934 |
agggcaggagggaatccagagagagtaaaagagccaagccgattgttgtcactggccttagttctctccccctcataaacactgatcaaggcagaggatt |
27848835 |
T |
|
| Q |
308 |
ggttatcttcacttgtataaaaaacttttgtcgttttgacaggtatagtagtaatcctaggaataactacacccatttgattatgctctagcctccaacc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27848834 |
ggttatcttcacttgtataaaaaacttttgtcgtcttgacaggtatagtagtattcctaggaataactacacccatttgattatgctctagcctccaacc |
27848735 |
T |
|
| Q |
408 |
taaagacagtggagtaacatcgat |
431 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
27848734 |
taaagacagtggagtaacatcgat |
27848711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 8 - 431
Target Start/End: Complemental strand, 27831855 - 27831432
Alignment:
| Q |
8 |
ccatttgtaggaatttctcatcttcagcacgatagttctcagcttctcgaatcaactttttaatttcttctgctgatagcctttctttgtaattagtaat |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || || ||||||||| ||||| || ||||||||||||| |||||| |||||||||||||| || || |
|
|
| T |
27831855 |
ccattcgtaggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaattggttat |
27831756 |
T |
|
| Q |
108 |
tataatctcatttgtactgccagtggatacttccttggcagcaactgtcaatgtaccgtttccatcaattgtaaaacatacatcaaaaggatggccgcgg |
207 |
Q |
| |
|
||| |||| ||||||| |||| ||||| ||||| |||||| |||||||| | || ||| |||| || | ||||||||||| ||||||||||| || |
|
|
| T |
27831755 |
tattatcttatttgtattgccggtggaaacttctgtggcagagactgtcaaaatgccattttcatcgatagcaaaacatacataaaaaggatggcgacga |
27831656 |
T |
|
| Q |
208 |
agggcaggagggaatccagagagagtaaaagagccaagccgattgttgtcactggccttagttctctccccctcataaacactgatcaaggcagaggatt |
307 |
Q |
| |
|
| ||||| | || |||| |||| ||||||| ||||| |||||||||| ||||| |||||||||||||||||||||| ||||| ||| || ||| || |
|
|
| T |
27831655 |
ggcgcaggggtcaacccagtgagattaaaagaaccaagtagattgttgtcgctggctctagttctctccccctcataaaccctgataaagacaaaggttt |
27831556 |
T |
|
| Q |
308 |
ggttatcttcacttgtataaaaaacttttgtcgttttgacaggtatagtagtaatcctaggaataactacacccatttgattatgctctagcctccaacc |
407 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| | |||||||||||||| ||| | ||| |||| |||||| |||| |||| ||| ||||||||||| |
|
|
| T |
27831555 |
ggttatcttcagttgtaaaaaaaacttttgtcttcttgacaggtatagtggtatttctatgaatcactacagccatgtgatcatgtataagcctccaacc |
27831456 |
T |
|
| Q |
408 |
taaagacagtggagtaacatcgat |
431 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
27831455 |
taaagacagtggagtaacatcgat |
27831432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 8615910 - 8616043
Alignment:
| Q |
15 |
taggaatttctcatcttcagcacgatagttctcagcttctcgaatcaactttttaatttcttctgctgatagcctttctttgtaattagtaattataatc |
114 |
Q |
| |
|
||||||||| ||||||||||| || || | ||| |||||| |||||| ||||||||||| || || |||| ||||||||||| ||| || || | || |
|
|
| T |
8615910 |
taggaatttttcatcttcagcgcggtactcctctgcttcttgaatcagttttttaatttcatcagccgataacctttctttgtcattggttatcgttatt |
8616009 |
T |
|
| Q |
115 |
tcatttgtactgccagtggatacttccttggcag |
148 |
Q |
| |
|
||||||||| ||||||| ||| |||||| |||| |
|
|
| T |
8616010 |
tcatttgtattgccagtagatttttccttcgcag |
8616043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 17274820 - 17274904
Alignment:
| Q |
47 |
cagcttctcgaatcaactttttaatttcttctgctgatagcctttctttgtaattagtaattataatctcatttgtactgccagt |
131 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||||| || | |||| |||||| ||||| ||| |||||||||||||||||||||| |
|
|
| T |
17274820 |
cagcttcttgaatcaatctttgaatttcttctgtcgacaaccttcctttgtctttagttattttaatctcatttgtactgccagt |
17274904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 15594233 - 15594353
Alignment:
| Q |
15 |
taggaatttctcatcttcagcacgatagttctcagcttctcgaatcaactttttaatttcttctgctgatagcctttctttgtaattagtaattataatc |
114 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| |||||| |||||| ||||||||||| | |||||| | ||||||||||| ||| || ||| | ||| |
|
|
| T |
15594233 |
taggaatttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaatttcatatgctgacaacctttctttgtcattggttattgtgatc |
15594332 |
T |
|
| Q |
115 |
tcatttgtactgccagtggat |
135 |
Q |
| |
|
|| |||||| ||||||||||| |
|
|
| T |
15594333 |
tcgtttgtattgccagtggat |
15594353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 11998762 - 11998838
Alignment:
| Q |
43 |
ttctcagcttctcgaatcaactttttaatttcttctgctgatagcctttctttgtaattagtaattataatctcatt |
119 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||| | ||| ||||||||||| || ||| |||||||||| |
|
|
| T |
11998762 |
ttctcagcttctttaatctactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcatt |
11998838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 12246160 - 12246076
Alignment:
| Q |
234 |
aaaagagccaagccgattgttgtcactggccttagttctctccccctcataaacactgatcaaggcagaggattggttatcttca |
318 |
Q |
| |
|
|||||| |||||| ||||||||||||||| || |||||||| ||||| ||||| | ||||||| | |||||||||||||||| |
|
|
| T |
12246160 |
aaaagaaccaagcaaattgttgtcactggcttttgttctctcaccctcgtaaaccttaatcaaggaactggattggttatcttca |
12246076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University