View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4744_high_2 (Length: 357)

Name: NF4744_high_2
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4744_high_2
NF4744_high_2
[»] chr3 (2 HSPs)
chr3 (1-345)||(43489823-43490167)
chr3 (253-317)||(45013921-45013985)
[»] chr8 (1 HSPs)
chr8 (203-345)||(38653101-38653243)
[»] chr6 (3 HSPs)
chr6 (203-345)||(13409913-13410055)
chr6 (252-315)||(4038752-4038815)
chr6 (253-323)||(10554652-10554722)
[»] chr1 (1 HSPs)
chr1 (204-334)||(44331736-44331866)
[»] chr4 (2 HSPs)
chr4 (256-316)||(1726250-1726310)
chr4 (256-308)||(2428679-2428731)
[»] chr2 (1 HSPs)
chr2 (256-308)||(44648686-44648738)
[»] chr7 (3 HSPs)
chr7 (253-315)||(3160284-3160346)
chr7 (281-323)||(6568948-6568990)
chr7 (281-323)||(6583107-6583149)


Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 43489823 - 43490167
Alignment:
Q  1 ttatcatcataaatattccttggagcaggaatacccgaaaactgaaaacgatcataaaagtttgtcgaatgctgagaagagttaggaaaaggtctagtat 100  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489823 ttatcatcataaacattccttgcaggaggaatacccgaaaactgaaaacgatcataaaagtttgtcgaatgctgagaagagttaggaaaaggtctagtat 43489922  T
Q  101 gaacaacaggatcagtagaagttgtaatagaaacaatcgaactcggtgaattcgaaacgttccattgagtagtagtagtagctggtggagggttacgaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489923 gaacaacaggatcagtagaagttgtaatagaaacaatcgaactcggtgaattcgaaacgttccattgagtagtagtagtagctggtggagggttacgaag 43490022  T
Q  201 tgtaacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgtt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43490023 tgtaacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagctgcttcagctgtttcaaatgtt 43490122  T
Q  301 cctaaccatactcttgctgctttgaatggatctcttatctctgct 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  43490123 cctaaccatactcttgctgctttgaatggatctcttatctctgct 43490167  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 45013921 - 45013985
Alignment:
Q  253 gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttgc 317  Q
    |||||||||||||||||    || ||||| ||||| |||||||||||||||| |||||| |||||    
T  45013921 gcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagccatacccttgc 45013985  T

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Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 203 - 345
Target Start/End: Original strand, 38653101 - 38653243
Alignment:
Q  203 taacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcc 302  Q
    |||||||||||||||| |||||||| |||||||| ||||||||||| |  | ||||| |||||| ||| |||| ||| ||||||||||||||||||| ||    
T  38653101 taacattttcagggaagttgagttttgctttgtttcctctaaaacgcaatgaagcttgatcataggctttagctgcatcttcagctgtttcaaatgtacc 38653200  T
Q  303 taaccatactcttgctgctttgaatggatctcttatctctgct 345  Q
    ||||||||||||||  |||||||| ||||||||||||||||||    
T  38653201 taaccatactcttgtagctttgaaaggatctcttatctctgct 38653243  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 345
Target Start/End: Complemental strand, 13410055 - 13409913
Alignment:
Q  203 taacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcc 302  Q
    |||||||||||||||| |||||||| ||| || | ||||| || |  |  |||||||||||||| || ||||| |||||||| ||||| || ||||||||    
T  13410055 taacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcc 13409956  T
Q  303 taaccatactcttgctgctttgaatggatctcttatctctgct 345  Q
    || ||||||||||  |||||||  |||||||||||| ||||||    
T  13409955 tagccatactctttgtgctttgtgtggatctcttatttctgct 13409913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 4038815 - 4038752
Alignment:
Q  252 agcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactctt 315  Q
    |||||| |||||||| |||||||||||  |||||||||| ||||| ||||||||||| ||||||    
T  4038815 agcagcctcatcataagctctagcagcttcttcagctgtatcaaaagttcctaaccaaactctt 4038752  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 10554722 - 10554652
Alignment:
Q  253 gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttgctgcttt 323  Q
    |||||||||||||| ||  |||| |||||||||||||||||||| || || | ||| ||||||||| ||||    
T  10554722 gcagcttcatcataagcagtagctgcagcttcagctgtttcaaaggtgccaagccacactcttgctccttt 10554652  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 334
Target Start/End: Original strand, 44331736 - 44331866
Alignment:
Q  204 aacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcct 303  Q
    ||||||||||||||| |||||||| ||| |||| ||||| || |  |  ||||||||||| || ||||| || |||||||| || ||||||||||||||     
T  44331736 aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca 44331835  T
Q  304 aaccatactcttgctgctttgaatggatctc 334  Q
    | |||||||||||||||||||  ||||||||    
T  44331836 agccatactcttgctgctttgtgtggatctc 44331866  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 1726310 - 1726250
Alignment:
Q  256 gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttg 316  Q
    ||||||||||||||||| || ||| |||| ||||||||||||||||||||||||| |||||    
T  1726310 gcttcatcatatgctcttgctgcatcttctgctgtttcaaatgttcctaaccatattcttg 1726250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 2428679 - 2428731
Alignment:
Q  256 gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaacca 308  Q
    |||||||||||||||||||| ||  |||||||||| |||||||||||||||||    
T  2428679 gcttcatcatatgctctagctgcttcttcagctgtctcaaatgttcctaacca 2428731  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 44648686 - 44648738
Alignment:
Q  256 gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaacca 308  Q
    ||||||||||||||| |||| ||  ||||||||||||||||||||||||||||    
T  44648686 gcttcatcatatgctttagctgcttcttcagctgtttcaaatgttcctaacca 44648738  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 3160346 - 3160284
Alignment:
Q  253 gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactctt 315  Q
    |||||||||||||| ||||| |||||  |||||||||| ||||| ||||||||||| ||||||    
T  3160346 gcagcttcatcataggctcttgcagcttcttcagctgtatcaaaagttcctaaccaaactctt 3160284  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 6568990 - 6568948
Alignment:
Q  281 cttcagctgtttcaaatgttcctaaccatactcttgctgcttt 323  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||    
T  6568990 cttcagctgtatcaaatgttcctaaccaaactctagctgcttt 6568948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 6583149 - 6583107
Alignment:
Q  281 cttcagctgtttcaaatgttcctaaccatactcttgctgcttt 323  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||    
T  6583149 cttcagctgtgtcaaatgttcctaaccaaactctagctgcttt 6583107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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