View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4744_high_3 (Length: 268)
Name: NF4744_high_3
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4744_high_3 |
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| [»] scaffold0152 (1 HSPs) |
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Alignment Details
Target: scaffold0152 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 11147 - 10897
Alignment:
| Q |
1 |
aaaaaagattaggaatactccttgtcatccaattaaaccatgttttatgtactgaattatggatattagaaagaaaacaaaagtatacatgacaacctac |
100 |
Q |
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| T |
11147 |
aaaaaatattaggaatactccttgtcatccaattaaaccatgttttatgtactgaattatggatattagaaagaaaacaaaagtatacatgacaacctac |
11048 |
T |
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| Q |
101 |
catatagccatccttaatctcatcagctgacaactttttctcataaataaattggaaattcatcaagtcatgcactaaaggcaaaggaataacatgaatc |
200 |
Q |
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| T |
11047 |
catatagccatccttaatctcatcaactgacaactttttctcataaataaattggaaattcatcaagtcatgcactaaaggcaaaggaacaacatgaatc |
10948 |
T |
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| Q |
201 |
aaatacgttggattgtagtttctttcaattttaaacttcattggaggggta |
251 |
Q |
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| T |
10947 |
aaatacgttggattgtagtttctttcaattttaaacttcattggaggggta |
10897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 2888939 - 2889074
Alignment:
| Q |
1 |
aaaaaagattaggaatactccttgtcatccaattaaaccatgttttatgtactgaattatggatattagaaagaaaacaaaagtatacatgacaacctac |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2888939 |
aaaaaatattaggaatactccttgtcatccaattaaaccatgttttatctactgaattatggatattagaaagaaaacaaaagtatacatgacaaccgac |
2889038 |
T |
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| Q |
101 |
catatagccatccttaatctcatcagctgacaactt |
136 |
Q |
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| T |
2889039 |
catatagtcatccttaatctcatcagctgacaactt |
2889074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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