View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4744_high_4 (Length: 246)

Name: NF4744_high_4
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4744_high_4
NF4744_high_4
[»] chr2 (13 HSPs)
chr2 (129-192)||(37914236-37914299)
chr2 (19-71)||(3831018-3831070)
chr2 (137-193)||(36315698-36315754)
chr2 (19-71)||(33732585-33732639)
chr2 (19-71)||(36315577-36315631)
chr2 (19-71)||(44958129-44958183)
chr2 (140-194)||(33732709-33732762)
chr2 (137-202)||(16089958-16090022)
chr2 (137-189)||(3830900-3830951)
chr2 (19-71)||(6376354-6376408)
chr2 (19-71)||(37914357-37914411)
chr2 (137-193)||(37498861-37498917)
chr2 (19-54)||(16089838-16089873)
[»] chr4 (15 HSPs)
chr4 (138-192)||(46192497-46192551)
chr4 (134-195)||(45829254-45829314)
chr4 (137-197)||(44275843-44275902)
chr4 (21-71)||(46192377-46192429)
chr4 (19-54)||(28093236-28093271)
chr4 (19-71)||(49243831-49243885)
chr4 (138-192)||(49243953-49244006)
chr4 (19-54)||(3672290-3672325)
chr4 (19-71)||(6112646-6112700)
chr4 (19-71)||(7217781-7217835)
chr4 (143-194)||(7217909-7217959)
chr4 (137-192)||(21390955-21391009)
chr4 (19-54)||(21391095-21391130)
chr4 (137-190)||(35545050-35545102)
chr4 (142-194)||(28093093-28093144)
[»] chr3 (17 HSPs)
chr3 (137-192)||(38231429-38231484)
chr3 (19-71)||(51339904-51339956)
chr3 (19-71)||(29460676-29460730)
chr3 (19-71)||(29471528-29471582)
chr3 (19-71)||(34750019-34750073)
chr3 (19-71)||(38231309-38231363)
chr3 (19-71)||(20856272-20856326)
chr3 (19-54)||(22894696-22894731)
chr3 (137-194)||(30735493-30735549)
chr3 (21-71)||(39072394-39072446)
chr3 (145-193)||(51339782-51339829)
chr3 (19-54)||(21559577-21559612)
chr3 (19-54)||(30735635-30735670)
chr3 (19-56)||(29820437-29820474)
chr3 (19-69)||(36370461-36370513)
chr3 (19-69)||(39467224-39467276)
chr3 (137-193)||(29472946-29473001)
[»] chr6 (4 HSPs)
chr6 (19-71)||(14022950-14023004)
chr6 (19-54)||(3987045-3987080)
chr6 (19-71)||(15345780-15345832)
chr6 (19-54)||(3118187-3118222)
[»] chr7 (21 HSPs)
chr7 (19-71)||(15020298-15020350)
chr7 (19-71)||(13108164-13108218)
chr7 (19-71)||(23980147-23980201)
chr7 (19-54)||(26972343-26972378)
chr7 (19-66)||(34108442-34108491)
chr7 (143-192)||(36346564-36346612)
chr7 (142-194)||(26972200-26972251)
chr7 (22-54)||(28307635-28307667)
chr7 (148-204)||(29953559-29953614)
chr7 (19-54)||(7700023-7700058)
chr7 (19-54)||(7700221-7700256)
chr7 (19-54)||(7700419-7700454)
chr7 (19-54)||(7700617-7700652)
chr7 (19-54)||(31148306-31148341)
chr7 (19-71)||(36346685-36346739)
chr7 (137-195)||(13108284-13108341)
chr7 (142-195)||(28307491-28307543)
chr7 (137-193)||(5811162-5811217)
chr7 (24-56)||(30887721-30887753)
chr7 (24-65)||(36957450-36957493)
chr7 (137-193)||(46475162-46475217)
[»] chr5 (13 HSPs)
chr5 (142-194)||(40887939-40887990)
chr5 (19-71)||(2237292-2237346)
chr5 (19-54)||(13347144-13347179)
chr5 (19-54)||(14831560-14831595)
chr5 (137-192)||(19596067-19596122)
chr5 (19-71)||(19596188-19596242)
chr5 (19-54)||(39370943-39370978)
chr5 (19-54)||(40888082-40888117)
chr5 (142-192)||(2237419-2237468)
chr5 (140-194)||(31800698-31800751)
chr5 (142-192)||(39371070-39371119)
chr5 (143-192)||(13347272-13347320)
chr5 (142-195)||(14831687-14831739)
[»] chr1 (9 HSPs)
chr1 (193-233)||(38884929-38884969)
chr1 (137-197)||(34307132-34307192)
chr1 (137-197)||(28647490-28647549)
chr1 (27-71)||(19258793-19258839)
chr1 (19-54)||(34307278-34307313)
chr1 (19-71)||(39249984-39250038)
chr1 (19-71)||(46901856-46901910)
chr1 (137-190)||(19258674-19258726)
chr1 (142-190)||(39249864-39249911)
[»] scaffold0062 (1 HSPs)
scaffold0062 (19-54)||(6734-6769)
[»] chr8 (8 HSPs)
chr8 (19-71)||(36189232-36189286)
chr8 (19-54)||(12665360-12665395)
chr8 (19-71)||(33726027-33726081)
chr8 (19-54)||(44081796-44081831)
chr8 (143-193)||(36189358-36189407)
chr8 (143-192)||(10203808-10203856)
chr8 (137-194)||(18184690-18184746)
chr8 (19-52)||(42162614-42162647)
[»] scaffold0043 (2 HSPs)
scaffold0043 (19-71)||(87285-87338)
scaffold0043 (137-193)||(87161-87216)


Alignment Details
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 37914299 - 37914236
Alignment:
Q  129 taccttggcacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 192  Q
    |||| ||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  37914299 taccctggtacatggggtgtacataagaggtgtatcaaaaaagggtgtctacctatctttttcc 37914236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 3831070 - 3831018
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccacatatttgtgacatgtggc 71  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||| |||||    
T  3831070 accaccttaggtgacatacacccttttacacccacacatttgtgacacgtggc 3831018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 36315698 - 36315754
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 193  Q
    |||||| |||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  36315698 cacatgaggtgtacataagaggtgtatcaaaaaaggatgtctacctatctttttcct 36315754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 33732585 - 33732639
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 71  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  33732585 accaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggc 33732639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 36315577 - 36315631
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 71  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  36315577 accaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggc 36315631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 44958129 - 44958183
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 71  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  44958129 accaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggc 44958183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 33732709 - 33732762
Alignment:
Q  140 atggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 194  Q
    |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  33732709 atggggtgtacataagaggtgtatgaaa-aagggtgtctacctatctttttcctt 33732762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 16089958 - 16090022
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctttatgaaaa 202  Q
    ||||||||||||||||||||||||||| ||| || ||||||||| ||||||||||||  |||||||    
T  16089958 cacatggggtgtacataagaggtgtatgaaa-aaaggtgtctacctatctttttcctaaatgaaaa 16090022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 3830951 - 3830900
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttt 189  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||    
T  3830951 cacatggggtgtacataagaggtgtatgaaa-aagggtgtctacctatctttt 3830900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 6376408 - 6376354
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 71  Q
    |||||| |||||||||||||||||||||||||  |||| ||||||||||||||||    
T  6376408 accaccataggtggcatacacccttttacacccacacacatttgtgacatgtggc 6376354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 37914411 - 37914357
Alignment:
Q  19 accaccttaggtggcatacacccttttaca--cccacatatttgtgacatgtggc 71  Q
    ||||||||||||||||||||||||||||||  | |||| ||||||||||||||||    
T  37914411 accaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggc 37914357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 37498917 - 37498861
Alignment:
Q  137 cacatgggg-tgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 193  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  37498917 cacatggggatgtacataagaggtgtataaaa-aagggtgtctacctatctttttcct 37498861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 16089838 - 16089873
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    ||||||||| ||||||||||||||||||||||||||    
T  16089838 accaccttaagtggcatacacccttttacacccaca 16089873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 46192497 - 46192551
Alignment:
Q  138 acatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 192  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  46192497 acatggggtgtacataagaggtgtatcaaaaaagggtgtctacctatctttttcc 46192551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 45829314 - 45829254
Alignment:
Q  134 tggcacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttccttt 195  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||    
T  45829314 tggcatatggggtgtacataa-aggtgtatcaaaaaagggtgtctacctatctttttccttt 45829254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 44275843 - 44275902
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctttat 197  Q
    ||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||    
T  44275843 cacatggggtgtacataagaggtgtatgaaa-aagggtgtctatctatctttttcctttat 44275902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 46192377 - 46192429
Alignment:
Q  21 caccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 71  Q
    ||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  46192377 caccttaggtggcatacacccttttacacccacacacatttgtgacatgtggc 46192429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 28093271 - 28093236
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  28093271 accaccttaggtggcatacacccttttacacccaca 28093236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 49243831 - 49243885
Alignment:
Q  19 accaccttaggtggcatacacccttttaca--cccacatatttgtgacatgtggc 71  Q
    ||||||||||||||||||||||||||||||  | |||| ||||||||||||||||    
T  49243831 accaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggc 49243885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 49243953 - 49244006
Alignment:
Q  138 acatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 192  Q
    |||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  49243953 acatggagtgtacataagaggtgtatgaaa-aaggatgtctacatatctttttcc 49244006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 3672290 - 3672325
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    |||||||||||||||||||||||||||||| |||||    
T  3672290 accaccttaggtggcatacacccttttacatccaca 3672325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 6112646 - 6112700
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 71  Q
    |||||||||| ||||||||||| |||||||||  ||||||||||||||| |||||    
T  6112646 accaccttagatggcatacaccattttacacccacacatatttgtgacacgtggc 6112700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 7217781 - 7217835
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 71  Q
    |||||||||||||||||||||||||| |||||  |||| |||||||||| |||||    
T  7217781 accaccttaggtggcatacaccctttaacacctacacacatttgtgacacgtggc 7217835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 7217909 - 7217959
Alignment:
Q  143 gggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 194  Q
    ||||||||||||||||||||| ||| |||||||| ||| |||||||||||||    
T  7217909 gggtgtacataagaggtgtatgaaa-aagggtgtttacctatctttttcctt 7217959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 21391009 - 21390955
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 192  Q
    |||||| ||||||||||| |||||||| ||| |||||||||||| |||||||||||    
T  21391009 cacatgaggtgtacataaaaggtgtatgaaa-aagggtgtctacctatctttttcc 21390955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 21391130 - 21391095
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    |||||||||| |||||||||||||||||||||||||    
T  21391130 accaccttagatggcatacacccttttacacccaca 21391095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 35545050 - 35545102
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatcttttt 190  Q
    ||||||| ||||||||||| ||||||| ||| |||||||||||| |||||||||    
T  35545050 cacatggagtgtacataagtggtgtatgaaa-aagggtgtctacctatcttttt 35545102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 28093144 - 28093093
Alignment:
Q  142 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 194  Q
    ||||||||||||||| |||||| ||| |||| ||||||| |||||||||||||    
T  28093144 ggggtgtacataagaagtgtatgaaa-aaggatgtctacctatctttttcctt 28093093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 38231429 - 38231484
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 192  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||    
T  38231429 cacatggggtgtacataagaggtgtatcaaaaaaggatgtctacctatctttttcc 38231484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 51339956 - 51339904
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccacatatttgtgacatgtggc 71  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||| |||||    
T  51339956 accaccttaggtggcatacatccttttacacccacacatttgtgacacgtggc 51339904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 29460676 - 29460730
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccacata--tttgtgacatgtggc 71  Q
    |||||||||||||||||||||||||||||||||||| |  |||||||||||||||    
T  29460676 accaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggc 29460730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 29471528 - 29471582
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccacata--tttgtgacatgtggc 71  Q
    |||||||||||||||||||||||||||||||||||| |  |||||||||||||||    
T  29471528 accaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggc 29471582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 34750073 - 34750019
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 71  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  34750073 accaccttaggtggcatacacccttttacacccacacatatttgtgacacgtggc 34750019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 38231309 - 38231363
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 71  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  38231309 accaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggc 38231363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 20856326 - 20856272
Alignment:
Q  19 accaccttaggtggcatacacccttttacaccc--acatatttgtgacatgtggc 71  Q
    ||||| |||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  20856326 accactttaggtggcatacacccttttacacccatacacatttgtgacatgtggc 20856272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 22894696 - 22894731
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  22894696 accaccttaggtggcatacacccttttacacccaca 22894731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 30735549 - 30735493
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 194  Q
    ||||||| ||||||||||| ||||||| ||| |||||||||||| |||||||||||||    
T  30735549 cacatggagtgtacataagtggtgtatgaaa-aagggtgtctacctatctttttcctt 30735493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 39072446 - 39072394
Alignment:
Q  21 caccttaggtggcatacacccttttacacccacat--atttgtgacatgtggc 71  Q
    |||||||| || |||||||||||||||||||||||  ||||||||||||||||    
T  39072446 caccttagatgacatacacccttttacacccacatacatttgtgacatgtggc 39072394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 51339829 - 51339782
Alignment:
Q  145 gtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 193  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  51339829 gtgtacataagaggtgtatgaaa-aagggtgtctacctatctttttcct 51339782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 21559577 - 21559612
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    |||| |||||||||||||||||||||||||||||||    
T  21559577 accatcttaggtggcatacacccttttacacccaca 21559612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 30735670 - 30735635
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    |||||||||| |||||||||||||||||||||||||    
T  30735670 accaccttagatggcatacacccttttacacccaca 30735635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 29820474 - 29820437
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccacata 56  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  29820474 accaccttaggtggcatacacactttgacacccacata 29820437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 36370513 - 36370461
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtg 69  Q
    ||||||||||||| |||||||| |||||||||  |||| ||||||||||||||    
T  36370513 accaccttaggtgtcatacacctttttacacccacacacatttgtgacatgtg 36370461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 39467276 - 39467224
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtg 69  Q
    |||||| ||| || ||||||||||||||||||  |||||||||||||||||||    
T  39467276 accaccatagatgacatacacccttttacacccacacatatttgtgacatgtg 39467224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 29472946 - 29473001
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 193  Q
    |||||||||||| |||||| ||||||| ||| |||| ||||||| ||||||||||||    
T  29472946 cacatggggtgtgcataagtggtgtatgaaa-aaggatgtctacctatctttttcct 29473001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 14022950 - 14023004
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 71  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  14022950 accaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggc 14023004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 3987080 - 3987045
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  3987080 accaccttaggtggcatacacccttttacacccaca 3987045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 15345832 - 15345780
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccacatatttgtgacatgtggc 71  Q
    |||||||||||||||||| || |||||||||||| | |||||||||| |||||    
T  15345832 accaccttaggtggcatatactcttttacacccatacatttgtgacacgtggc 15345780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 3118222 - 3118187
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    ||||||||||||||||||||||||||||||| ||||    
T  3118222 accaccttaggtggcatacacccttttacactcaca 3118187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 15020298 - 15020350
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccacatatttgtgacatgtggc 71  Q
    |||||| ||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  15020298 accaccataggtggcatacaaccttttacacccacacatttgtgacatatggc 15020350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 13108164 - 13108218
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 71  Q
    ||||||||||| ||||||||||||||||||||  |||| ||||||||||||||||    
T  13108164 accaccttaggcggcatacacccttttacacccacacacatttgtgacatgtggc 13108218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 23980147 - 23980201
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 71  Q
    |||||| |||||||||||||||||||||||||  |||| ||||||||||||||||    
T  23980147 accaccataggtggcatacacccttttacacccacacacatttgtgacatgtggc 23980201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 26972378 - 26972343
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  26972378 accaccttaggtggcatacacccttttacacccaca 26972343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 34108442 - 34108491
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc--cacatatttgtgacat 66  Q
    ||||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  34108442 accaccttaggtgacatacacccttttacacccacacatatttgtgacat 34108491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 36346612 - 36346564
Alignment:
Q  143 gggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 192  Q
    ||||||||||||||||||||| ||| |||||||||||| |||||||||||    
T  36346612 gggtgtacataagaggtgtatgaaa-aagggtgtctacctatctttttcc 36346564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 26972251 - 26972200
Alignment:
Q  142 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 194  Q
    ||||||||||||||| |||||| ||| |||||||||||| |||||||||||||    
T  26972251 ggggtgtacataagaagtgtatgaaa-aagggtgtctacctatctttttcctt 26972200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 28307667 - 28307635
Alignment:
Q  22 accttaggtggcatacacccttttacacccaca 54  Q
    |||||||||||||||||||||||||||||||||    
T  28307667 accttaggtggcatacacccttttacacccaca 28307635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 29953614 - 29953559
Alignment:
Q  148 tacataagaggtgtatcaaagaagggtgtctacatatctttttcctttatgaaaaca 204  Q
    ||||||||| |||||| ||| |||||||||||| |||||||||||||| ||||||||    
T  29953614 tacataagaagtgtatgaaa-aagggtgtctacctatctttttcctttttgaaaaca 29953559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 7700058 - 7700023
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    |||||||||| |||||||||||||||||||||||||    
T  7700058 accaccttagatggcatacacccttttacacccaca 7700023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 7700256 - 7700221
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    |||||||||| |||||||||||||||||||||||||    
T  7700256 accaccttagatggcatacacccttttacacccaca 7700221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 7700454 - 7700419
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    |||||||||| |||||||||||||||||||||||||    
T  7700454 accaccttagatggcatacacccttttacacccaca 7700419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 7700652 - 7700617
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    |||||||||| |||||||||||||||||||||||||    
T  7700652 accaccttagatggcatacacccttttacacccaca 7700617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 31148306 - 31148341
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    |||| |||||||||||||||||||||||||||||||    
T  31148306 accatcttaggtggcatacacccttttacacccaca 31148341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 36346739 - 36346685
Alignment:
Q  19 accaccttaggtggcatacacccttttacaccc--acatatttgtgacatgtggc 71  Q
    |||| ||||||||||||||||||||||||||||  ||| |||||||||| |||||    
T  36346739 accatcttaggtggcatacacccttttacacccagacacatttgtgacacgtggc 36346685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 13108284 - 13108341
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttccttt 195  Q
    |||||| ||||||||| | |||||||| ||| |||||||||||| ||||||||||||||    
T  13108284 cacatgaggtgtacatgaaaggtgtataaaa-aagggtgtctacctatctttttccttt 13108341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 28307543 - 28307491
Alignment:
Q  142 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttccttt 195  Q
    |||||||||||||||||||||| ||| || | ||||||| ||||||||||||||    
T  28307543 ggggtgtacataagaggtgtatgaaa-aaagatgtctacctatctttttccttt 28307491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 5811217 - 5811162
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 193  Q
    |||||| |||||||||  ||||||||| ||| |||||||||||| ||||||||||||    
T  5811217 cacatgaggtgtacatgggaggtgtataaaa-aagggtgtctacctatctttttcct 5811162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 30887721 - 30887753
Alignment:
Q  24 cttaggtggcatacacccttttacacccacata 56  Q
    |||||||||||||||| ||||||||||||||||    
T  30887721 cttaggtggcatacacacttttacacccacata 30887753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 36957450 - 36957493
Alignment:
Q  24 cttaggtggcatacacccttttacaccc--acatatttgtgaca 65  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||    
T  36957450 cttaggtggcatacacccttttacatccatacatatttgtgaca 36957493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 46475162 - 46475217
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 193  Q
    |||||| | ||||||| |||||||||| ||| |||||||||||| ||||||||||||    
T  46475162 cacatgagatgtacatgagaggtgtataaaa-aagggtgtctacctatctttttcct 46475217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 40887990 - 40887939
Alignment:
Q  142 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 194  Q
    |||||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  40887990 ggggtgtacataagaggtgtatgaaa-aagggtgtctacctatctttttcctt 40887939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 2237292 - 2237346
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 71  Q
    ||||||||||||| ||||||||||||||||||  ||||||||||||||| |||||    
T  2237292 accaccttaggtgacatacacccttttacacccacacatatttgtgacacgtggc 2237346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 13347144 - 13347179
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  13347144 accaccttaggtggcatacacccttttacacccaca 13347179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 14831560 - 14831595
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  14831560 accaccttaggtggcatacacccttttacacccaca 14831595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 19596122 - 19596067
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 192  Q
    ||||||||||||||||||||||| | ||||| |||| ||||||| |||||||||||    
T  19596122 cacatggggtgtacataagaggtatttcaaaaaaggatgtctacctatctttttcc 19596067  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 19596242 - 19596188
Alignment:
Q  19 accaccttaggtggcatacacccttttacaccca--catatttgtgacatgtggc 71  Q
    |||||||||||||||||||||| ||||||| |||  || ||||||||||||||||    
T  19596242 accaccttaggtggcatacacctttttacatccacgcacatttgtgacatgtggc 19596188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 39370943 - 39370978
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    |||||||||| |||||||||||||||||||||||||    
T  39370943 accaccttagatggcatacacccttttacacccaca 39370978  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 40888117 - 40888082
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    ||||||||||||||||||||| ||||||||||||||    
T  40888117 accaccttaggtggcatacactcttttacacccaca 40888082  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 2237419 - 2237468
Alignment:
Q  142 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 192  Q
    ||||||||||||||| |||||| ||| |||||||||||| |||||||||||    
T  2237419 ggggtgtacataagaagtgtatgaaa-aagggtgtctacctatctttttcc 2237468  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 31800698 - 31800751
Alignment:
Q  140 atggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 194  Q
    |||||||||||| ||||||||||| ||| |||||||||| | |||||||||||||    
T  31800698 atggggtgtacacaagaggtgtatgaaa-aagggtgtctgcctatctttttcctt 31800751  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 39371070 - 39371119
Alignment:
Q  142 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 192  Q
    ||||||||||||||| |||||| ||| |||||||||||| |||||||||||    
T  39371070 ggggtgtacataagaagtgtatgaaa-aagggtgtctacctatctttttcc 39371119  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 13347272 - 13347320
Alignment:
Q  143 gggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 192  Q
    |||||||||||||| |||||| ||| |||||||||||| |||||||||||    
T  13347272 gggtgtacataagaagtgtatgaaa-aagggtgtctacctatctttttcc 13347320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 14831687 - 14831739
Alignment:
Q  142 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttccttt 195  Q
    ||||||||||||||| |||||| ||| |||||||| ||| ||||||||||||||    
T  14831687 ggggtgtacataagaagtgtatgaaa-aagggtgtttacctatctttttccttt 14831739  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 38884929 - 38884969
Alignment:
Q  193 tttatgaaaacaagaatatgaatctatgtcaaagttgatga 233  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  38884929 tttatcaaaacaagaatatgaatctatgtcaaagttgatga 38884969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 34307192 - 34307132
Alignment:
Q  137 cacatggg-gtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctttat 197  Q
    |||||||| ||||||||||||||||||| ||| |||| ||||||| ||||||||||||||||    
T  34307192 cacatgggagtgtacataagaggtgtatgaaaaaagg-tgtctacctatctttttcctttat 34307132  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 28647490 - 28647549
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctttat 197  Q
    |||||||| ||||||| |||| ||||| ||| |||||||||||| ||||||||||||||||    
T  28647490 cacatgggatgtacatgagagatgtataaaa-aagggtgtctacctatctttttcctttat 28647549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 19258839 - 19258793
Alignment:
Q  27 aggtggcatacacccttttacacccac--atatttgtgacatgtggc 71  Q
    |||||||||||||| ||||||||||||  ||||||||||||||||||    
T  19258839 aggtggcatacacctttttacacccacatatatttgtgacatgtggc 19258793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 34307313 - 34307278
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    |||||||||||||||||||||||||||||| |||||    
T  34307313 accaccttaggtggcatacacccttttacatccaca 34307278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 39250038 - 39249984
Alignment:
Q  19 accaccttaggtggcatacacccttttacaccc--acatatttgtgacatgtggc 71  Q
    |||| ||||||||||||||||||||||||||||  ||| |||||||||| |||||    
T  39250038 accatcttaggtggcatacacccttttacacccatacacatttgtgacacgtggc 39249984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 46901910 - 46901856
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 71  Q
    ||||||||||||| |||||||| |||||||||  ||||||||||||||| |||||    
T  46901910 accaccttaggtgacatacaccattttacaccaacacatatttgtgacacgtggc 46901856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 19258726 - 19258674
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatcttttt 190  Q
    |||||||||||||||| |||| ||||| ||| |||||||||||| |||||||||    
T  19258726 cacatggggtgtacatgagagatgtat-aaaaaagggtgtctacctatcttttt 19258674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 39249911 - 39249864
Alignment:
Q  142 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatcttttt 190  Q
    |||||||||||||||||||||| ||| || ||||||||| |||||||||    
T  39249911 ggggtgtacataagaggtgtatgaaa-aaaggtgtctacctatcttttt 39249864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 6734 - 6769
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  6734 accaccttaggtggcatacacccttttacacccaca 6769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 36189232 - 36189286
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccacat--atttgtgacatgtggc 71  Q
    |||| ||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  36189232 accatcttaggtggcatacacccttttacacccacatacatttgtgacacgtggc 36189286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 12665360 - 12665395
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    ||||||||||||||||||||||||||||||| ||||    
T  12665360 accaccttaggtggcatacacccttttacactcaca 12665395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 33726027 - 33726081
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccac--atatttgtgacatgtggc 71  Q
    ||||| |||||||||||||||| ||||||||||||  | ||||||||||||||||    
T  33726027 accactttaggtggcatacacctttttacacccacaaacatttgtgacatgtggc 33726081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 44081796 - 44081831
Alignment:
Q  19 accaccttaggtggcatacacccttttacacccaca 54  Q
    |||| |||||||||||||||||||||||||||||||    
T  44081796 accatcttaggtggcatacacccttttacacccaca 44081831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 36189358 - 36189407
Alignment:
Q  143 gggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 193  Q
    ||||||||||||| ||||||| ||| |||||||||||| ||||||||||||    
T  36189358 gggtgtacataagtggtgtatgaaa-aagggtgtctacctatctttttcct 36189407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 10203808 - 10203856
Alignment:
Q  143 gggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 192  Q
    ||||||||||||||| ||||| ||| |||||||||||| |||||||||||    
T  10203808 gggtgtacataagagatgtatgaaa-aagggtgtctacctatctttttcc 10203856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 18184690 - 18184746
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 194  Q
    |||||| ||||||||||| |||||||| ||| |||| ||||||| |||||||||||||    
T  18184690 cacatgaggtgtacataaaaggtgtatgaaa-aaggatgtctacctatctttttcctt 18184746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 42162614 - 42162647
Alignment:
Q  19 accaccttaggtggcatacacccttttacaccca 52  Q
    ||||||||||||| ||||||||||||||||||||    
T  42162614 accaccttaggtgtcatacacccttttacaccca 42162647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 87338 - 87285
Alignment:
Q  19 accaccttaggtggcatacacccttttacacc-cacatatttgtgacatgtggc 71  Q
    ||||||||||||||||||||||||| |||||| |||| |||||||||| |||||    
T  87338 accaccttaggtggcatacacccttgtacaccacacacatttgtgacacgtggc 87285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 87216 - 87161
Alignment:
Q  137 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 193  Q
    |||||||||||||||||| |||||||| ||| || ||||||||| ||||||||||||    
T  87216 cacatggggtgtacataaaaggtgtatgaaa-aaaggtgtctacctatctttttcct 87161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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