View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4744_high_5 (Length: 246)
Name: NF4744_high_5
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4744_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 39228128 - 39228357
Alignment:
| Q |
1 |
tgatgaaagatgaaaaagttccagaaatattcaagtttgatatatctagtgacacaacagaactattgtttgtgtcacattgaataccataccgggtagt |
100 |
Q |
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| T |
39228128 |
tgatggaagatgaaaaagttccagaaacattcaagtttgatatatccagtgacacaacagaactattgtttgtgtcacattgaataccataccaagtagt |
39228227 |
T |
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| Q |
101 |
agcaaagggacatgtagttagagatattccaactttttaaagaagttttggattcaaaatcctgtttgagagaaactaagatagaagcttgtgttttcaa |
200 |
Q |
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| T |
39228228 |
a-caaagggacatgtagttagagatattccaactttttaaagaagttttggattcaaaatcctgtttgagagaaactaagatagaagcttgtgttttcaa |
39228326 |
T |
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| Q |
201 |
agacataggaagtgatgatgatgaagaaaca |
231 |
Q |
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| T |
39228327 |
agacataggaagtgatgatgatgaagaaaca |
39228357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 25547327 - 25547553
Alignment:
| Q |
1 |
tgatgaaagatgaaaaagttccagaaatattcaagtttgatatatctagtgacacaacagaactattgtttgtgtcacattgaataccataccgggtagt |
100 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
25547327 |
tgatggaagatgaaaaagttccagaaacattcaagtttgatatatctagtgacaaaacagaactattgtttgtgtcacattgaatatcataccaagtagt |
25547426 |
T |
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| Q |
101 |
agcaaagggacatgtagttagagatattccaactttttaaagaagttttggattcaaaatcctgtttgagagaaactaagatagaagcttgtgttttcaa |
200 |
Q |
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| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547427 |
a-caaagggacatgtagttggagatattccaactctttaaagaagttttggattcaaaatcctgtttgagagaaactaagatagaagcttgtgttttcaa |
25547525 |
T |
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| Q |
201 |
agacataggaagtgatgatgatgaagaa |
228 |
Q |
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| T |
25547526 |
agacataggaagtgatgatgatgaagaa |
25547553 |
T |
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