View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4744_high_7 (Length: 241)
Name: NF4744_high_7
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4744_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4501287 - 4501508
Alignment:
| Q |
1 |
taacatcaatgatcacaccaacacttgttgtattttgggaactattggcaagattttgtaattggagaagtgagattattagaggaagcaaaagcaaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4501287 |
taacatcaatgatcacaccaacacttgttgtattttgggaactattggcaagattttgtaattggagaagtgagattattagaggaagcaaaagcaaaag |
4501386 |
T |
|
| Q |
101 |
atttggaactgagttccaagttttagcataaaaattcatattggtgattccaatgtattataaagaactttaagaatttaaactctaacagactgatatt |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4501387 |
atttggaactgagttccaagtttgagcataaaaattcatattggtgattccaatgtattataaagaactttaagaatttaaactctaacagactgatatt |
4501486 |
T |
|
| Q |
201 |
atgcatatataaataaaatgaa |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4501487 |
atgcatatataaataaaatgaa |
4501508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 4508520 - 4508668
Alignment:
| Q |
1 |
taacatcaatgatcacaccaacacttgttgtattttgggaactattggcaagattttgtaattggagaagtgagattattagaggaagcaaaagcaaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||| |||||||||||||||||||||||| | |||||||| |
|
|
| T |
4508520 |
taacatcaatgatcacaccaacacttgttgtagtttgggaactattagcaagacattggaataaaagaagtgagattattagaggaagccatagcaaaag |
4508619 |
T |
|
| Q |
101 |
atttggaactgagt---tccaagttttagcataaaaattcatattggtg |
146 |
Q |
| |
|
|||||||||||| | ||||||||| |||| |||| |||||||||||| |
|
|
| T |
4508620 |
atttggaactgaattcctccaagtttgagcagaaaacttcatattggtg |
4508668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4495736 - 4495953
Alignment:
| Q |
1 |
taacatcaatgatcacaccaacacttgttgtattttgggaactattggcaagattttgtaattggagaagtgagattattagaggaagcaaaagcaaaag |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||| || |||||| |||||||| ||| ||| | | |||||||||||| ||||| || || | |||||||||| |
|
|
| T |
4495736 |
taacatcaatgaccacaccaacacttgtagt---ttgggacctattggccagacattggagtaggagaagtgagactattacagtaacccaaagcaaaag |
4495832 |
T |
|
| Q |
101 |
atttggaactgagttccaagttttagcataaaaattcatattggtgattccaatgtattataaagaactttaagaatttaaactctaacagactgatatt |
200 |
Q |
| |
|
||||||||||||| || |||||| |||||||||||||||||||||| ||||| | ||||| || || ||||||||| || |||| ||||| ||||| |
|
|
| T |
4495833 |
atttggaactgagctcgaagtttgagcataaaaattcatattggtggttccactctatta-aagtaatattaagaattaaagttctatgagacttatatt |
4495931 |
T |
|
| Q |
201 |
atgcatatataaataaaatgaa |
222 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
4495932 |
atgcatacataaataaaatgaa |
4495953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University