View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4744_low_13 (Length: 229)
Name: NF4744_low_13
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4744_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 8353457 - 8353339
Alignment:
| Q |
95 |
gtaaagaaagaagtcccatatcaaaaactttgtgaaatatagagattgagtgagttataaaccaatgtatgacttctttttagacattcattacttcgct |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8353457 |
gtaaagaaagaagtcccatatcaaaaactttgtgaaatatagagattgagtgagttataaaccaatgtatgacttctttttagacattcattacttcgct |
8353358 |
T |
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| Q |
195 |
gttgagttgatgaatttat |
213 |
Q |
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| T |
8353357 |
gttgagttgatgaatttat |
8353339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 8358053 - 8357936
Alignment:
| Q |
97 |
aaagaaagaagtcccatatcaaaaactttgtgaaatatagagattgagtgagttataaa-ccaatgtatgacttctttttagacattcattacttcgctg |
195 |
Q |
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|||||||||||||||| || |||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||| |
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| T |
8358053 |
aaagaaagaagtcccacattggaaactttgtgaaatgtagagattgagtgagctataaaaccaatgtatgacttcttttcagacattcattgcttcgctg |
8357954 |
T |
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| Q |
196 |
ttgagttgatgaatttat |
213 |
Q |
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| T |
8357953 |
ttgagttgataaatttat |
8357936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 8353504 - 8353447
Alignment:
| Q |
15 |
ttatacttgtaggcaagataatagctagtgacaatttcaatttaaaagtaaagaaaga |
72 |
Q |
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| T |
8353504 |
ttatacttgtaggcaagataatagctagtgacaatttcaatttaaaagtaaagaaaga |
8353447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 8358102 - 8358045
Alignment:
| Q |
15 |
ttatacttgtaggcaagataatagctagtgacaatttcaatttaaaagtaaagaaaga |
72 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
8358102 |
ttatacttgtaggcaagataatagctagtgacaatttcaatttgaaagaaaagaaaga |
8358045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 8359827 - 8359770
Alignment:
| Q |
15 |
ttatacttgtaggcaagataatagctagtgacaatttcaatttaaaagtaaagaaaga |
72 |
Q |
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|||||| || |||| |||||||||||||||||||||||||||| |||| ||| ||||| |
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| T |
8359827 |
ttatacatgaaggctagataatagctagtgacaatttcaatttgaaaggaaacaaaga |
8359770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 8359759 - 8359712
Alignment:
| Q |
119 |
aaactttgtgaaatatagagattgagtgagttat-aaaccaatgtatg |
165 |
Q |
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|||||||||||||| ||||||||||||||| ||| ||||||||||||| |
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| T |
8359759 |
aaactttgtgaaatgtagagattgagtgagctataaaaccaatgtatg |
8359712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 8428646 - 8428704
Alignment:
| Q |
97 |
aaagaaagaagtcccatatcaaaaactttgtgaaatatagagattgagtgagttataaa |
155 |
Q |
| |
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||||||||| |||||| ||| ||||||||||||||||| |||| ||| |||| |||||| |
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| T |
8428646 |
aaagaaagacgtcccacatcgaaaactttgtgaaatattgagagtgactgagctataaa |
8428704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 8450791 - 8450733
Alignment:
| Q |
97 |
aaagaaagaagtcccatatcaaaaactttgtgaaatatagagattgagtgagttataaa |
155 |
Q |
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||||||||| |||||| ||| ||||||||||||||||| |||| ||| |||| |||||| |
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| T |
8450791 |
aaagaaagacgtcccacatcgaaaactttgtgaaatattgagagtgactgagctataaa |
8450733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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