View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4744_low_16 (Length: 214)

Name: NF4744_low_16
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4744_low_16
NF4744_low_16
[»] chr6 (32 HSPs)
chr6 (17-196)||(4612276-4612455)
chr6 (17-196)||(4558516-4558695)
chr6 (33-196)||(4581405-4581568)
chr6 (29-196)||(4618692-4618859)
chr6 (33-196)||(4517731-4517894)
chr6 (29-196)||(3173394-3173561)
chr6 (33-196)||(4488771-4488934)
chr6 (29-196)||(4507302-4507469)
chr6 (29-196)||(4513549-4513716)
chr6 (17-196)||(4572357-4572536)
chr6 (17-189)||(4587030-4587202)
chr6 (33-196)||(4575846-4576009)
chr6 (33-196)||(4623698-4623861)
chr6 (29-187)||(4603510-4603668)
chr6 (33-203)||(4627534-4627704)
chr6 (29-196)||(4482256-4482423)
chr6 (29-196)||(4594401-4594568)
chr6 (28-182)||(4265626-4265780)
chr6 (50-196)||(4569465-4569607)
chr6 (33-196)||(4258750-4258913)
chr6 (29-187)||(4565429-4565587)
chr6 (28-178)||(4471323-4471473)
chr6 (29-178)||(4599572-4599721)
chr6 (33-195)||(4255395-4255545)
chr6 (109-196)||(4502943-4503030)
chr6 (28-178)||(4462616-4462766)
chr6 (33-196)||(4562053-4562220)
chr6 (33-113)||(4497819-4497899)
chr6 (133-196)||(4298172-4298235)
chr6 (29-77)||(4493415-4493463)
chr6 (142-177)||(4483534-4483569)
chr6 (28-77)||(4472616-4472665)
[»] scaffold0475 (1 HSPs)
scaffold0475 (29-184)||(2227-2382)
[»] chr3 (1 HSPs)
chr3 (28-185)||(1282835-1282992)
[»] scaffold0288 (1 HSPs)
scaffold0288 (29-184)||(2021-2176)
[»] scaffold0199 (1 HSPs)
scaffold0199 (29-196)||(1149-1316)
[»] chr8 (2 HSPs)
chr8 (29-196)||(1675912-1676079)
chr8 (29-180)||(20862380-20862531)
[»] chr7 (1 HSPs)
chr7 (33-176)||(3088156-3088299)
[»] chr5 (1 HSPs)
chr5 (36-174)||(24104508-24104646)
[»] chr2 (1 HSPs)
chr2 (75-183)||(1349533-1349641)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 5e-95; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 4612276 - 4612455
Alignment:
17 aatgagtgattcaaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4612276 aatgagtgattcaaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggc 4612375  T
117 tttcacataacatttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4612376 tttcacataacattcgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 4612455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 4558695 - 4558516
Alignment:
17 aatgagtgattcaaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggc 116  Q
    ||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||     
4558695 aatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagagga 4558596  T
117 tttcacataacatttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    ||||||||||| | ||| ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||| ||||||    
4558595 tttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggttt 4558516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 4581568 - 4581405
Alignment:
33 ccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacatttg 132  Q
    |||||||||||||| |||||||||||| ||||||| ||||||| ||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||    
4581568 ccacatgcagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg 4581469  T
133 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||    
4581468 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgtttgatggttt 4581405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 4618859 - 4618692
Alignment:
29 aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataaca 128  Q
    |||||||||||  ||| | |||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||     
4618859 aaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacc 4618760  T
129 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||    
4618759 tttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcttttgatggttt 4618692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 4517894 - 4517731
Alignment:
33 ccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacatttg 132  Q
    |||||||||||| ||| |||||||||| ||||||||||||||||||| ||  | |||||||||||||||||||| |||||||||||||||||||| ||||    
4517894 ccacatgcagtgataactccatatccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacctttg 4517795  T
133 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
4517794 tcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtccaaaagcctttgatggttt 4517731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 3173561 - 3173394
Alignment:
29 aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataaca 128  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||  | |||||||||||||| |||||| |||||||||||||||||||     
3173561 aaaaccacatgcagtgttaactccatatccagttcaaggccatatcaatgcattgttgaaactagcaaaactacttcactttagaggctttcacataacc 3173462  T
129 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||  |||||||||||||||| ||||||    
3173461 tttgtaaacactgaatacaatcacaaacggttgctcaaatcaaagggtccaaatgcctttgatggttt 3173394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 4488771 - 4488934
Alignment:
33 ccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacatttg 132  Q
    ||||||||||||||||  |||| |||||||||||||||||||||| ||||  | ||||||| |||||| |||||||||||||| ||||||||||| ||||    
4488771 ccacatgcagtgttaacaccatttccagttcaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggatttcacataacctttg 4488870  T
133 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
4488871 tcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggttt 4488934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 4507469 - 4507302
Alignment:
29 aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataaca 128  Q
    |||||||||||| ||||| ||||||||||||  |||||||||||||||||||||  |||||||||| || |||||||||||| ||||||||||||||||     
4507469 aaaaccacatgctgtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagcttcttcaccttcgaggctttcacataacc 4507370  T
129 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||    
4507369 tttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcctttgatggttt 4507302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 29 - 196
Target Start/End: Original strand, 4513549 - 4513716
Alignment:
29 aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataaca 128  Q
    |||||||||||| ||||| |||||||||||| |||||||||||||||||||| |  ||| | |||||||||| ||||||||||||||||||||||||||     
4513549 aaaaccacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggctttcacataacc 4513648  T
129 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| ||||||    
4513649 tttgttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggttt 4513716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 4572536 - 4572357
Alignment:
17 aatgagtgattcaaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggc 116  Q
    ||||||||||  |||||||||||| |||||||| ||||||||||||||||||||||||||||||||  |  ||||||||||| ||||||||||||||||     
4572536 aatgagtgataaaaaaccacatgctgtgttaatcccatatccagttcaaggccatatcaatccattgttgcaactagcaaaatttcttcaccttagaggt 4572437  T
117 tttcacataacatttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    ||||||||||| | ||| ||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||| ||||||    
4572436 tttcacataacctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagaggtcaaaatgcctttgatggttt 4572357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 4587202 - 4587030
Alignment:
17 aatgagtgattcaaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggc 116  Q
    |||||||||||||||||| ||||| |||||||| |||| |||||||||||||||||||||||||||  | |||||||| ||||||||||||||| ||||     
4587202 aatgagtgattcaaaacctcatgctgtgttaatcccatctccagttcaaggccatatcaatccattgttgaaactagctaaacttcttcaccttcgagga 4587103  T
117 tttcacataacatttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttg 189  Q
    ||||||||||| ||||| ||||| ||||||||||||||||| ||||| || ||||||| ||||||||||||||    
4587102 tttcacataacctttgtaaacactgaatacaatcacaaacggttgcttaagtcaagagctccaaatgcctttg 4587030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 4576009 - 4575846
Alignment:
33 ccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacatttg 132  Q
    |||||||||||||||| ||||| |||||||||||||||||||||| ||||  | ||| |||||||||| |||||||||||||||||||||||||| ||||    
4576009 ccacatgcagtgttaactccatttccagttcaaggccatatcaatgcattgttgaaaatagcaaaactgcttcaccttagaggctttcacataacctttg 4575910  T
133 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    | ||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||| ||||||    
4575909 ttaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggttt 4575846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 4623861 - 4623698
Alignment:
33 ccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacatttg 132  Q
    |||||||| ||||| ||| |||||||||||||||| ||||||||||||||  ||||||||||||| |||||| |||||| ||||||||||||||| ||||    
4623861 ccacatgctgtgttgattgcatatccagttcaaggtcatatcaatccattgttcaaactagcaaagcttctttaccttaaaggctttcacataacctttg 4623762  T
133 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
       |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
4623761 gtcacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcctttgatggttt 4623698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 29 - 187
Target Start/End: Complemental strand, 4603668 - 4603510
Alignment:
29 aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataaca 128  Q
    ||||| |||||| ||||| |||||||||||| |||||||||||||||||||| |  | ||||||||||||||  ||||||||||||| |||||||||||     
4603668 aaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacc 4603569  T
129 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctt 187  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
4603568 tttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcctt 4603510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 4627704 - 4627534
Alignment:
33 ccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacatttg 132  Q
    |||||||| ||||| ||||||| |||| ||||||||||||||||||||||  | | |||||||||| | |||||||||||||||||||||||||| ||||    
4627704 ccacatgctgtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattacttcaccttagaggctttcacataacctttg 4627605  T
133 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttttgatgat 203  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||| |||||| ||||||    
4627604 tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgat 4627534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 4482423 - 4482256
Alignment:
29 aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataaca 128  Q
    |||||||||||||||||| | ||||| ||||| |||||||||||||||| ||||  | ||| ||| |||||| ||||||||||||||||||||||||||     
4482423 aaaaccacatgcagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaactacttcaccttagaggctttcacataacc 4482324  T
129 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||| ||||||    
4482323 tttgtcaacaccgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcctttgatggttt 4482256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 4594568 - 4594401
Alignment:
29 aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataaca 128  Q
    |||||||||||| ||||| ||||||  |||| ||||||| ||||| ||||||||  ||||||| ||||||||||||||||||||||| |||||||||||     
4594568 aaaaccacatgctgtgttgattccagctccacttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcacataacc 4594469  T
129 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||    
4594468 tttgtcaacactgaatacaatcataaacgtttgctcaaatcaagaggtccaaatgccttagatggttt 4594401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 4265626 - 4265780
Alignment:
28 caaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataac 127  Q
    |||| |||||||| ||||| ||||||  |||| ||||||||||||||||| ||||  |||| |||| ||| |||||||||||||||||||||||||||||    
4265626 caaagccacatgctgtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttcttcaccttagaggctttcacataac 4265725  T
128 atttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaat 182  Q
     ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
4265726 ctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaat 4265780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 4569607 - 4569465
Alignment:
50 tccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacatttgtcaacaccgaatacaat 149  Q
    |||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    |||    
4569607 tccatatccacttcaaggccatatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccga----aat 4569512  T
150 cacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    |||||||  ||||||||||||||||||||||| ||||||| ||||||    
4569511 cacaaacatttgctcaaatcaagaggtccaaaagcctttgatggttt 4569465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 4258750 - 4258913
Alignment:
33 ccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacatttg 132  Q
    |||||||| ||||| ||||||||||||| |||||||||||||||||||||  |||||||||| || ||||||||| ||| ||| ||||||||||| ||||    
4258750 ccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagctaagcttcttcactttaaaggttttcacataacctttg 4258849  T
133 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||||  ||||||| ||| ||||||    
4258850 tcaacactgaatataatcacaaacgtttgctcaaatcaagaggtgaaaatgccgttgatggttt 4258913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 29 - 187
Target Start/End: Complemental strand, 4565587 - 4565429
Alignment:
29 aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataaca 128  Q
    |||||||||||| ||||| ||||||  |||| ||||||| ||||| ||||||||  ||||||| ||||||||||||||||||||||| ||||| |||||     
4565587 aaaaccacatgctgtgttgattccagctccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataacc 4565488  T
129 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctt 187  Q
    ||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||    
4565487 tttgtcaacactgaatacaatcataaacgattgctaaaatcaagaggtccaaatgcctt 4565429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 4471473 - 4471323
Alignment:
28 caaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataac 127  Q
    |||| |||||||| || || ||||||| ||||| |||||||||||||||| ||||  | ||||||||||| |||||||||||||||||||||||||||||    
4471473 caaagccacatgctgtattgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataac 4471374  T
128 atttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtcc 178  Q
     ||||||||||| |||||||||||||||  ||||||||| |||||||||||    
4471373 gtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcc 4471323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 29 - 178
Target Start/End: Complemental strand, 4599721 - 4599572
Alignment:
29 aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataaca 128  Q
    ||||| ||||||||| || |||||||  ||| |||||||  ||||||||| ||||||||||||||||||  |||||||||||||||| ||| |||||||     
4599721 aaaactacatgcagtattgattccattaccaattcaaggaaatatcaatctattaatcaaactagcaaagattcttcaccttagaggattttacataacc 4599622  T
129 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtcc 178  Q
    || || |||||||| |||||||||||||||||||||||||||||||||||    
4599621 ttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcc 4599572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 4255395 - 4255545
Alignment:
33 ccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacatttg 132  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||| |||| ||||            ||||    
4255395 ccacatgctgtgttgattccatatccagttcaaggccatatcaatctattattcaaactagcaaaattacttcatcttaaaggc------------tttg 4255482  T
133 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggtt 195  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||    
4255483 tcaacaccgaatacaatcacaaacgcttgctcgaatcaagaggtccaaaagcctttgatggtt 4255545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 4502943 - 4503030
Alignment:
109 ttagaggctttcacataacatttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
4502943 ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggttt 4503030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 4462766 - 4462616
Alignment:
28 caaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataac 127  Q
    |||| |||||||| ||||| ||||||| ||||   ||||||||||||||| ||||  | ||||||| |||||| |||||||||||||| |||||||||||    
4462766 caaagccacatgctgtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggttttcacataac 4462667  T
128 atttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtcc 178  Q
     ||||||||||| ||||||||||||||  |||||||||| |||||||||||    
4462666 ctttgtcaacactgaatacaatcacaattgcttgctcaattcaagaggtcc 4462616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 4562220 - 4562053
Alignment:
33 ccacatgcagtgttaatt----ccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacat-aac 127  Q
    ||||||||||||||||||    |||| |||||||||||| ||||||||| ||||  | ||| |||||||||| |||||||| |||||||||||||| |||    
4562220 ccacatgcagtgttaattaactccatttccagttcaaggtcatatcaatgcattgttgaaaatagcaaaactgcttcacctaagaggctttcacataaac 4562121  T
128 atttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
     ||||| ||||| ||||||||||||||||| ||||| ||||||||||||  ||||||||||| ||||||    
4562120 ctttgttaacactgaatacaatcacaaacgtttgct-aaatcaagaggtgaaaatgcctttgatggttt 4562053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 4497819 - 4497899
Alignment:
33 ccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttaga 113  Q
    |||||||||||||||| ||||| |||| || |||||||||||||||||||  | ||||||| |||| | ||||||||||||    
4497819 ccacatgcagtgttaactccatttccaatttaaggccatatcaatccattgttgaaactaggaaaattacttcaccttaga 4497899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 4298172 - 4298235
Alignment:
133 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    |||||||||||||||||||||||| | ||||| ||||||| |||||||| || |||| ||||||    
4298172 tcaacaccgaatacaatcacaaacacctgctcgaatcaaggggtccaaaagcttttgatggttt 4298235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 4493463 - 4493415
Alignment:
29 aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaat 77  Q
    |||||||||||||||||| ||||||| ||||| |||||| |||||||||    
4493463 aaaaccacatgcagtgttgattccatttccagctcaaggtcatatcaat 4493415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 4483534 - 4483569
Alignment:
142 aatacaatcacaaacgcttgctcaaatcaagaggtc 177  Q
    |||||||||||||||| |||||||||||||||||||    
4483534 aatacaatcacaaacgtttgctcaaatcaagaggtc 4483569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 4472665 - 4472616
Alignment:
28 caaaaccacatgcagtgttaattccatatccagttcaaggccatatcaat 77  Q
    ||||||||||||||||||| ||||||| ||||   |||||||||||||||    
4472665 caaaaccacatgcagtgttgattccatgtccaccccaaggccatatcaat 4472616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 2382 - 2227
Alignment:
29 aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataaca 128  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||     
2382 aaaaccacatgctgtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttcttcaccttagaggctttcacataacc 2283  T
129 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgc 184  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||    
2282 tttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgc 2227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 1282992 - 1282835
Alignment:
28 caaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataac 127  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||    
1282992 caaaaccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataac 1282893  T
128 atttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc 185  Q
     ||||| || || |||||||||||||||||||||||||||||||||||||||||||||    
1282892 ctttgttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc 1282835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 2021 - 2176
Alignment:
29 aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataaca 128  Q
    |||||||||||  ||| | |||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||     
2021 aaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacc 2120  T
129 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgc 184  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||    
2121 tttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgc 2176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 1316 - 1149
Alignment:
29 aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataaca 128  Q
    |||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||  ||||||||||||||||| ||||||||||||||| |||  ||||     
1316 aaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacc 1217  T
129 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    | ||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| | ||||||    
1216 tatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggttt 1149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 1676079 - 1675912
Alignment:
29 aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataaca 128  Q
    |||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||  ||||||||||||||||| ||||||||||||||| |||  ||||     
1676079 aaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacc 1675980  T
129 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggttt 196  Q
    | ||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| | ||||||    
1675979 tatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggttt 1675912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 20862380 - 20862531
Alignment:
29 aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataaca 128  Q
    |||||||||||||||||||| |||||||||| ||||||| |||||||||||| |  | |||||||||||||| |||||||||||||||||| ||||||||    
20862380 aaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataaca 20862479  T
129 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaa 180  Q
    |||||||| || ||||||||||||||||||||||| || ||||  |||||||    
20862480 tttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaa 20862531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 33 - 176
Target Start/End: Complemental strand, 3088299 - 3088156
Alignment:
33 ccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacatttg 132  Q
    |||||||| ||||| |||||||||||| ||||||| ||||| ||||||||  | ||||||||||||||||||||||||| ||||||||||||||| ||||    
3088299 ccacatgctgtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagcaaaacttcttcaccttaaaggctttcacataacctttg 3088200  T
133 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggt 176  Q
    |||| ||||||||||||||||| || ||||| ||||||||||||    
3088199 tcaataccgaatacaatcacaaccgtttgcttaaatcaagaggt 3088156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 24104646 - 24104508
Alignment:
36 catgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacatttgtca 135  Q
    ||||| ||||| ||||||  |||| ||||||| ||||||||| ||||  ||||||||| ||| ||||||||||||||||||||||||||||| || || |    
24104646 catgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataaccttcgtga 24104547  T
136 acaccgaatacaatcacaaacgcttgctcaaatcaagag 174  Q
    ||||||||||||||||||||||||||||| |||||||||    
24104546 acaccgaatacaatcacaaacgcttgctcgaatcaagag 24104508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 1349533 - 1349641
Alignment:
75 aatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacatttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagag 174  Q
    ||||||||  ||||||| |||||| | ||||||   | ||||||  ||||||||||||||||||| |||| ||| ||||||||||| |||||||| | ||    
1349533 aatccatttctcaaactggcaaaaatacttcacaacaaaggcttctacataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccatag 1349632  T
175 gtccaaatg 183  Q
    |||| ||||    
1349633 gtcctaatg 1349641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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