View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4744_low_18 (Length: 212)
Name: NF4744_low_18
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4744_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 44565117 - 44565223
Alignment:
| Q |
90 |
ctgttatctgatgtgttggtggctataggatgaaactgcagcaatggtatgtactgtgctcttagtgtctggagtgactacactcctgcacactattttt |
189 |
Q |
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| T |
44565117 |
ctgttatctgatgtgttggtggctataggatgaaactgcagcaatggtatgtactgtgctcttagtgtctggagtgactacactcctgcacactattttt |
44565216 |
T |
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| Q |
190 |
gggtctc |
196 |
Q |
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||||||| |
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| T |
44565217 |
gggtctc |
44565223 |
T |
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Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 36035975 - 36035895
Alignment:
| Q |
91 |
tgttatctgatgtgttggtggctataggatgaaactgcagcaatggtatgtactgtgctcttagtgtctggagtgactaca |
171 |
Q |
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|||||||||||||||| |||||||||||| |||| ||| ||| |||||| ||||||||||| |||||||||||||||||| |
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| T |
36035975 |
tgttatctgatgtgttagtggctataggaggaaattgctgcagtggtatcaactgtgctctttgtgtctggagtgactaca |
36035895 |
T |
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