View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4744_low_2 (Length: 500)
Name: NF4744_low_2
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4744_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 45123315 - 45122834
Alignment:
| Q |
1 |
gactagtcaaacactccattgatcccggtacacccacaatctccaaagcaataccaaactatatctacaacactctaccgcaagagtataatagaaaaga |
100 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45123315 |
gactagtcaaacactccattgaccccgatacacccacaatctccaaagcaataccaaactatatctacaacactctaccgcaagagtataatagaaaaga |
45123216 |
T |
|
| Q |
101 |
taaaattcatatatatacttaaaatatttctgactgatgcatcttgaaatacagaaatcgagcttatatataagtatcactttgtttgttttgcacttca |
200 |
Q |
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| T |
45123215 |
taaaattcagatatatacttaaaatatttctgattgatgtatcttgaaatacagaaatcgagcttatatataggtatcactttgtttgtcttgcacttca |
45123116 |
T |
|
| Q |
201 |
agaaacaatattgtcacctacaagacttgtcaagcaataaagtaaataagtggaggaatcaccttgttcttcttgcaaagatcacgaaacaaccttgctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| || |
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| T |
45123115 |
agaaacaatattgtcacctacaagacttgtcaagcaataaagtaaacaagtggaggaatcatcttgttcttcttacaaagatcacgaaacaaccttgttt |
45123016 |
T |
|
| Q |
301 |
atcttgttctacctcttcttttataatttaagtagttaatgtaggacttctccaacatgtattttttcagccaacaacaacagattgaaattttcatatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
45123015 |
atcttgttctacctcttcttttataatttaagtagttaatgtaggacttctccaacatgtattttttcagtcaacaacaacaaattgaaattttcatatt |
45122916 |
T |
|
| Q |
401 |
cctagagataaaattttgagcttactaccaaatcggagatcattttcgttgccaaaacattatactagtaacaaacactaac |
482 |
Q |
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| T |
45122915 |
cctagagataaaattttgagcttactaccaaatcggagatcattttcgttgccaaaacattatactagtaccaaacactaac |
45122834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 34980595 - 34980546
Alignment:
| Q |
217 |
cctacaagacttgtcaagcaataaagtaaataagtggaggaatcaccttg |
266 |
Q |
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| T |
34980595 |
cctacaagacttgccaagcaagaaagtaaacaagtgaaggaatcaccttg |
34980546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 15549684 - 15549756
Alignment:
| Q |
193 |
gcacttcaagaaacaatattgtcacctacaagacttgtcaagcaataaagtaaataagtggaggaatcacctt |
265 |
Q |
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| T |
15549684 |
gcacttcaagaaacaacattgtggcctacaatacttgtcatgcaagaaaggaaacaagtgaatgaaccacctt |
15549756 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 35397399 - 35397486
Alignment:
| Q |
85 |
agtataatagaaaagataaaattcatatatatacttaaaatatttctgactgatgcatcttgaaatacagaaatcgagcttatatata |
172 |
Q |
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| T |
35397399 |
agtataagagaaaaggaaaatgtcacatataaacttaaaatgtttctgactgatgcatcttataataaagaaagagagtttatatata |
35397486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 12467149 - 12467205
Alignment:
| Q |
181 |
tttgtttgttttgcacttcaagaaacaatattgtcacctacaagacttgtcaagcaa |
237 |
Q |
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| T |
12467149 |
tttgtttgtcttgcacttcaagaaacaagcttgtggcctacaaaacttatcaagcaa |
12467205 |
T |
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