View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4744_low_4 (Length: 290)
Name: NF4744_low_4
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4744_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 35522582 - 35522331
Alignment:
| Q |
19 |
cacagatacagacaatgaacacaacactgagacgtaggtgtcaataataatttgagaaaatagaagtgaccgaatgtaacaccgttcctctgtgtcaaca |
118 |
Q |
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| T |
35522582 |
cacaaatacagacactgaacacaacactgagacgtaggtgtcaataataatttgagaaaatagaagtgaccgaatgtaacaacgttcctctgtgtcaaca |
35522483 |
T |
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| Q |
119 |
tgcattcaatctaaagtgttggtgctaggtgtgactatttggcaaatacctaacaatatcagctccataagaagccgaagccttttcaagttcttgctca |
218 |
Q |
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| T |
35522482 |
ttcattcaatctaaagtgtcggtgctaggtgtgactatttggcaaatacctaacaatatcagctccataagaagccgaagccttttcaagttcttgctca |
35522383 |
T |
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| Q |
219 |
ctcaagctcaaacgcttaacatcaccagcaacttttaggtggtcccttatat |
270 |
Q |
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| T |
35522382 |
ctcaagctcaaacgcttaacatcaccagcaacttttaggtggtcccttatat |
35522331 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 29236264 - 29236301
Alignment:
| Q |
61 |
aataataatttgagaaaatagaagtgaccgaatgtaac |
98 |
Q |
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| T |
29236264 |
aataataatttgagaaaatagaagtgattgaatgtaac |
29236301 |
T |
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