View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4744_low_9 (Length: 242)
Name: NF4744_low_9
Description: NF4744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4744_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 3110158 - 3110367
Alignment:
| Q |
15 |
agcataggcataatcctctataggtgcattactcgctttacatcgttcgagcagcttatatcccacatcagacatgttatttttacacaacccctcaata |
114 |
Q |
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| T |
3110158 |
agcataggcataaacctctataggtgcattactcgctctacatcgttcgagcagcttatatcccacatcagacatgttatttttacacaacccctcaata |
3110257 |
T |
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| Q |
115 |
taagcagcgtaacaatacgaattcagagtcacaccagcttcctccatttcatcaaatacatattccacatgtttcaaatcatcactattcttacacaag- |
213 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3110258 |
taagcagcgtaacaatacgaattcggagtcacaccagcttcctccatttcatcaaatacatattccacgtgtttcaaatcatcactattcttacacaagc |
3110357 |
T |
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| Q |
214 |
ccttgataac |
223 |
Q |
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|||||||||| |
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| T |
3110358 |
ccttgataac |
3110367 |
T |
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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 41626648 - 41626550
Alignment:
| Q |
72 |
atatcccacatcagacatgttatttttacacaacccctcaatataagcagcgtaacaatacgaattcagagtcacaccagcttcctccatttcatcaaa |
170 |
Q |
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|||||||| ||||||| | ||| ||||||||||||||||||||||| || || |||||||||||| ||||||| |||||||| | |||||||||||| |
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| T |
41626648 |
atatcccaaatcagactgatgattattacacaacccctcaatataagctgcatagcaatacgaattcggagtcaccccagcttctttcatttcatcaaa |
41626550 |
T |
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