View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4745-Insertion-14 (Length: 467)

Name: NF4745-Insertion-14
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4745-Insertion-14
NF4745-Insertion-14
[»] chr1 (4 HSPs)
chr1 (8-467)||(18345042-18345501)
chr1 (17-454)||(18339897-18340334)
chr1 (312-459)||(18303657-18303804)
chr1 (36-212)||(18303390-18303566)


Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Complemental strand, 18345501 - 18345042
Alignment:
Q  8 ctatgttgcctcccccggcggtgtcttccaaaaccgtttcatcccttccaaacccaccaaacgttactctccatcactcatcgctgctgcccgccgtctc 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18345501 ctatgtcgcctcccccggcggtgtcttccaaaaccgtttcatcccttccaaacccaccaaacgttactctccatcactcatcgctgctgcccgccgtctc 18345402  T
Q  108 ctagcatctgccctcttagatgacccactgaaccaatactttgcacttatctcccaacgttgtattccgctcttctcatttcaattcatttataactacc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18345401 ctagcatctgccctcttagatgacccactgaaccaatactttgcacttatctcccaacgttgtattccactcttctcatttcaattcatttataactacc 18345302  T
Q  208 tttttaaaaatcaactaaaatcatttgcaaattcgtctgaatttagcctactataccctagctatattgagattctctcagaggcagaaaatctcaatat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18345301 tttttaaaaatcaactaaaatcatttgcaaattcgtctgaatttaacctactgtaccctagctatattgagattctctcagaggcagaaaatctcaatat 18345202  T
Q  308 acgatataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacataca 407  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18345201 acggtataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacataca 18345102  T
Q  408 aatgttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataag 467  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18345101 aaggttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataag 18345042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 17 - 454
Target Start/End: Complemental strand, 18340334 - 18339897
Alignment:
Q  17 ctcccccggcggtgtcttccaaaaccgtttcatcccttccaaacccaccaaacgttactctccatcactcatcgctgctgcccgccgtctcctagcatct 116  Q
    |||||| |||||||||||||| |||||||||||| |||||||||| ||| |||||  ||| |||||||||||| | |||||| | ||||| ||||| |||    
T  18340334 ctcccctggcggtgtcttccataaccgtttcatctcttccaaaccaacccaacgtgcctcaccatcactcatctccgctgccagacgtcttctagcttct 18340235  T
Q  117 gccctcttagatgacccactgaaccaatactttgcacttatctcccaacgttgtattccgctcttctcatttcaattcatttataactacctttttaaaa 216  Q
    || ||||||||||| || || |||||||||||||| ||  | || ||||  ||| |||||||||| || |||| |||| |||||||||||||||||||||    
T  18340234 gcgctcttagatgatccgcttaaccaatactttgccctagtttctcaacactgtgttccgctcttgtcgtttcgattcgtttataactacctttttaaaa 18340135  T
Q  217 atcaactaaaatcatttgcaaattcgtctgaatttagcctactataccctagctatattgagattctctcagaggcagaaaatctcaatatacgatataa 316  Q
    ||||  |||  || || || | ||  ||||| |||| | | || |||||||||| ||||||||||||||| ||||     |||||| |    || |||||    
T  18340134 atcagttaatgtcgttagcgagtttctctgactttaacttgctttaccctagctttattgagattctctctgaggatccgaatctctacgagcgttataa 18340035  T
Q  317 tgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaatgttgtg 416  Q
     ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||  |||| ||| |||| ||||||    
T  18340034 cgctcgtggagagaatgttatgttgccggaggttccatttgaggattttcgggttggttcgcagttttttatcttgaataggaagcatgcaaaggttgtg 18339935  T
Q  417 ttgagagatcaaaagctatggaacaagtttcagattcc 454  Q
     |||||||| | ||||||||||| ||||||| ||||||    
T  18339934 gtgagagattataagctatggaagaagtttcggattcc 18339897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 459
Target Start/End: Original strand, 18303657 - 18303804
Alignment:
Q  312 tataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaatg 411  Q
    ||||||||||||||| || |||||||||||||||||||| ||||  ||||||||||    || || ||||| |||||| |||||||||||||| |||| |    
T  18303657 tataatgctcgtggaaaggatgtaatgatgccggaggtttcattcaaggattttcgcaaaggctcgcaattctttatcctgaaccggaaacatgcaaagg 18303756  T
Q  412 ttgtgttgagagatcaaaagctatggaacaagtttcagattccatgta 459  Q
    ||||  || ||||||||||| | ||||| ||||||| |||||||||||    
T  18303757 ttgttctgcgagatcaaaagttgtggaagaagtttcggattccatgta 18303804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 212
Target Start/End: Original strand, 18303390 - 18303566
Alignment:
Q  36 caaaaccgtttcatcccttccaaacccaccaaacgttactctccatcactcatcgctgctgcccgccgtctcctagcatctgccctcttagatgacccac 135  Q
    |||||||  ||||||||||||||| | ||  ||||   ||||||  |||| || || ||||| ||||||||| ||||  |||| || || ||||||||||    
T  18303390 caaaaccacttcatcccttccaaaacaactcaacgcgcctctccgacacttatagccgctgctcgccgtctcttagccactgctctattggatgacccac 18303489  T
Q  136 tgaaccaatactttgcactta-tctcccaacgttgtattccgctcttctcatttcaattcatttataactaccttttt 212  Q
      |||||||||||||| |||| ||||||||| ||||||||| |||||||| |||| |||  ||||||||| |||||||    
T  18303490 ataaccaatactttgc-cttagtctcccaacattgtattccactcttctcgtttcgatttgtttataactcccttttt 18303566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University