View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4745-Insertion-16 (Length: 370)
Name: NF4745-Insertion-16
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745-Insertion-16 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 12173877 - 12174164
Alignment:
| Q |
15 |
gttcaattattgtctgcatgtctttacataagctgcaacagaattttataacatgaggtctccgccaaatccaatatgcaagagttcttcaagtacactc |
114 |
Q |
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| T |
12173877 |
gttcaattattgactgcatgtctttacataagctgcaacagaattttataacatgaggtctccgccaaatccaatatgcaagagttcttcaagtacactc |
12173976 |
T |
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| Q |
115 |
ctgttcaaattttcaaaaataattttaacttagtgatttca--------aaaataattttcaagtaattttccctaagaagattaccttaagtcttttgt |
206 |
Q |
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| T |
12173977 |
ctgttcaaattttcaaacataattttaacttagtgatttcagtgtatagtatattaatatcaagcaattttccctaagaatattaccttaagtcttttgt |
12174076 |
T |
|
| Q |
207 |
ttccactgcttccagattgggagttccatagacacttcgccgaaaattcattgcgggtggaactgtttcttcttgatcatcagattca |
294 |
Q |
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| T |
12174077 |
ttctactgcttccagattgggagttccatagacactttgctgaaaattcattgctggtggaactgtttcttcttgctcatcagattca |
12174164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 12418305 - 12418592
Alignment:
| Q |
15 |
gttcaattattgtctgcatgtctttacataagctgcaacagaattttataacatgaggtctccgccaaatccaatatgcaagagttcttcaagtacactc |
114 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12418305 |
gttcaattattgactgcatgtctttacataagctgcaacagaattttataacatgaggtctccgccaaatccaatatgcaagagttcttcaagtacactc |
12418404 |
T |
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| Q |
115 |
ctgttcaaattttcaaaaataattttaacttagtgatttca--------aaaataattttcaagtaattttccctaagaagattaccttaagtcttttgt |
206 |
Q |
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| T |
12418405 |
ctgttcaaattttcaaacataattttaacttagtgatttcagtgtatagtatattaatatcaagcaattttccctaagaatattaccttaagtcttttgt |
12418504 |
T |
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| Q |
207 |
ttccactgcttccagattgggagttccatagacacttcgccgaaaattcattgcgggtggaactgtttcttcttgatcatcagattca |
294 |
Q |
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||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
12418505 |
ttctactgcttccagattgggagttccatagacactttgctgaaaattcattgctggtggaactgtttcttcttgctcatcagattca |
12418592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 12185340 - 12185482
Alignment:
| Q |
14 |
ggttcaattattgtctgcatgtctttacataagctgcaacagaattttataacatgaggtctccgccaaatccaatatgcaagagttcttcaagtacact |
113 |
Q |
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| T |
12185340 |
ggttcaattattgcctgcatgtctttacataagctgcaacagaattttataacatgaggtctccgccaaatccaatatgcaagagttcttcaagtacacc |
12185439 |
T |
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| Q |
114 |
cctgttcaaattttcaaaaataattttaacttagtgatttcaa |
156 |
Q |
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| T |
12185440 |
cctgttcaaattttcaaacataatttcaagttagtgatttcaa |
12185482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 12429768 - 12429910
Alignment:
| Q |
14 |
ggttcaattattgtctgcatgtctttacataagctgcaacagaattttataacatgaggtctccgccaaatccaatatgcaagagttcttcaagtacact |
113 |
Q |
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| T |
12429768 |
ggttcaattattgcctgcatgtctttacataagctgcaacagaattttataacatgaggtctccgccaaatccaatatgcaagagttcttcaagtacacc |
12429867 |
T |
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| Q |
114 |
cctgttcaaattttcaaaaataattttaacttagtgatttcaa |
156 |
Q |
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|||||||||||||||||| ||||||| || ||||||||||||| |
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| T |
12429868 |
cctgttcaaattttcaaacataatttcaagttagtgatttcaa |
12429910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 12174198 - 12174285
Alignment:
| Q |
286 |
tcagattcacatccttc---ttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgtttcca |
370 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12174198 |
tcagattcacatccttcttcttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgcttcca |
12174285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 12185710 - 12185797
Alignment:
| Q |
286 |
tcagattcacatccttc---ttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgtttcca |
370 |
Q |
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| T |
12185710 |
tcagattcacatccttcttcttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgcttcca |
12185797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 12418626 - 12418713
Alignment:
| Q |
286 |
tcagattcacatccttc---ttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgtttcca |
370 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12418626 |
tcagattcacatccttcttcttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgcttcca |
12418713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 12430138 - 12430225
Alignment:
| Q |
286 |
tcagattcacatccttc---ttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgtttcca |
370 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12430138 |
tcagattcacatccttcttcttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgcttcca |
12430225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 167 - 292
Target Start/End: Original strand, 12185550 - 12185674
Alignment:
| Q |
167 |
caagtaattttccctaagaagattaccttaagtcttttgtttccactgcttccagattggga---gttccatagacacttcgccgaaaattcattgcggg |
263 |
Q |
| |
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|||| |||||||||||||| ||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||| || ||||||||||||| || |
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| T |
12185550 |
caagcaattttccctaaga----taccttaagtcttctgtttctgctgtttccagattgggaagagttccatagacactttgctgaaaattcattgctgg |
12185645 |
T |
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| Q |
264 |
tggaactgtttcttcttgatcatcagatt |
292 |
Q |
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|||||||||||||||||| |||||||||| |
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| T |
12185646 |
tggaactgtttcttcttgctcatcagatt |
12185674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 167 - 292
Target Start/End: Original strand, 12429978 - 12430102
Alignment:
| Q |
167 |
caagtaattttccctaagaagattaccttaagtcttttgtttccactgcttccagattggga---gttccatagacacttcgccgaaaattcattgcggg |
263 |
Q |
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|||| |||||||||||||| ||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||| || ||||||||||||| || |
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| T |
12429978 |
caagcaattttccctaaga----taccttaagtcttctgtttctgctgtttccagattgggaagagttccatagacactttgctgaaaattcattgctgg |
12430073 |
T |
|
| Q |
264 |
tggaactgtttcttcttgatcatcagatt |
292 |
Q |
| |
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|||||||||||||||||| |||||||||| |
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| T |
12430074 |
tggaactgtttcttcttgctcatcagatt |
12430102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 5583567 - 5583607
Alignment:
| Q |
69 |
gaggtctccgccaaatccaatatgcaagagttcttcaagta |
109 |
Q |
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||||||||| |||||||| |||| ||||||||||||||||| |
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| T |
5583567 |
gaggtctccaccaaatccgatattcaagagttcttcaagta |
5583607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 273
Target Start/End: Complemental strand, 4272103 - 4272021
Alignment:
| Q |
195 |
taagtcttttgtttccactgctt-ccagattgg---gagttccatagacacttcgccgaaaattcattgcgggtggaactgtt |
273 |
Q |
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||||||||||| ||| ||||||| ||||||||| ||||||||||||||||| || ||||| |||||| |||||||||||| |
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| T |
4272103 |
taagtcttttgcttctactgctttccagattggaaagagttccatagacactttgctgaaaaatcattgttggtggaactgtt |
4272021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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