View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4745-Insertion-19 (Length: 155)

Name: NF4745-Insertion-19
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4745-Insertion-19
NF4745-Insertion-19
[»] chr1 (3 HSPs)
chr1 (8-152)||(23473854-23473997)
chr1 (8-54)||(40961620-40961666)
chr1 (9-61)||(35306740-35306792)
[»] chr5 (1 HSPs)
chr5 (10-61)||(16597659-16597710)
[»] chr3 (2 HSPs)
chr3 (9-61)||(8925864-8925916)
chr3 (88-147)||(8925943-8926001)
[»] chr4 (1 HSPs)
chr4 (9-48)||(48084778-48084817)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 1e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 23473854 - 23473997
Alignment:
Q  8 gtttttcattccccccaatttatgaggtatacaatggaatgaaacaactcaattaattaattacnnnnnnnnnccctatat-cttattccatcacatatc 106  Q
    ||||||||||||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||         |||||| | | ||||||||||||||||    
T  23473854 gtttttcattccctccaatttgtgaggtatacaatggaatgatacaacttaattaattaattacttttttt--ccctattttcgtattccatcacatatc 23473951  T
Q  107 atgtcttcttgtcctccttcatgcattgtgtcttacttctcgaggt 152  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  23473952 atgtcttcttgtcctccttcatgcattgtgtcttgcttctcgaggt 23473997  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 40961620 - 40961666
Alignment:
Q  8 gtttttcattccccccaatttatgaggtatacaatggaatgaaacaa 54  Q
    ||||||||||||| |||||||  ||||||||| ||||||||||||||    
T  40961620 gtttttcattccctccaatttgggaggtatacgatggaatgaaacaa 40961666  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 35306792 - 35306740
Alignment:
Q  9 tttttcattccccccaatttatgaggtatacaatggaatgaaacaactcaatt 61  Q
    ||||||||||||||||||||  ||||||| |||||||||| ||| ||| ||||    
T  35306792 tttttcattccccccaatttgggaggtatgcaatggaatggaaccacttaatt 35306740  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 16597710 - 16597659
Alignment:
Q  10 ttttcattccccccaatttatgaggtatacaatggaatgaaacaactcaatt 61  Q
    |||||||||||||||||||| ||||||| |||||||||| ||| ||| ||||    
T  16597710 ttttcattccccccaatttaggaggtatgcaatggaatggaaccacttaatt 16597659  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 8925864 - 8925916
Alignment:
Q  9 tttttcattccccccaatttatgaggtatacaatggaatgaaacaactcaatt 61  Q
    ||||||||||| || ||| |  |||||||||||||||||||||||||| ||||    
T  8925864 tttttcattcctcctaatctgcgaggtatacaatggaatgaaacaacttaatt 8925916  T

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Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 8925943 - 8926001
Alignment:
Q  88 tcttattccatcacatatcatgtcttcttgtcctccttcatgcattgtgtcttacttctc 147  Q
    |||| ||||||||||||  ||||||| || |||||||||||| ||||||| |||||||||    
T  8925943 tcttgttccatcacatacaatgtctt-ttctcctccttcatgtattgtgttttacttctc 8926001  T

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Target: chr4 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 48084778 - 48084817
Alignment:
Q  9 tttttcattccccccaatttatgaggtatacaatggaatg 48  Q
    ||||||||||||||||||||  ||||||||| ||||||||    
T  48084778 tttttcattccccccaatttgggaggtatacgatggaatg 48084817  T

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