View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4745-Insertion-21 (Length: 301)
Name: NF4745-Insertion-21
Description: NF4745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4745-Insertion-21 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr5 (8 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 301
Target Start/End: Complemental strand, 8525135 - 8524841
Alignment:
| Q |
7 |
aaaaatgagactgattgctgctcatgggatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggta |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| | |
|
|
| T |
8525135 |
aaaaatgagattgattgctgctcatgggatggtgtcacgtgtgacaccatcagtggtcacgtgattggcctcaaccttggctgtgaaggtcttcaaggca |
8525036 |
T |
|
| Q |
107 |
tattcagtcctaacagtacccttttccatcttgcttatattcaaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtttgg |
206 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8525035 |
tactcaatcctaacagtacccttttccatcttgcttatattcaaaaactcaaccttgctaacaatgatttctctggctcttattttcattcaaagtttgg |
8524936 |
T |
|
| Q |
207 |
tgggtttttgagtctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcac |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8524935 |
tgggtttttgagtctcacacatcttgacttgtctcatagttaccttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcac |
8524841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 14554505 - 14554452
Alignment:
| Q |
31 |
tgggatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaacctt |
84 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||||||||||||||| ||||| |
|
|
| T |
14554505 |
tgggatggtgtcacgtgcgacaccatatcaggtcacgtgattgaactagacctt |
14554452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 7 - 301
Target Start/End: Complemental strand, 42125680 - 42125386
Alignment:
| Q |
7 |
aaaaatgagactgattgctgctcatgggatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggta |
106 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| || || |||||||||||||| |||||||||| |
|
|
| T |
42125680 |
aaaaatgggactgattgctgctcatggaatggtgtcacgtgtgataccatcactcgtcacgtgattggcctcaatcttggctgtgaaggccttcaaggta |
42125581 |
T |
|
| Q |
107 |
tattcagtcctaacagtacccttttccatcttgcttatattcaaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtttgg |
206 |
Q |
| |
|
| | ||||||||||||||||||| |||||| | || |||||| |||||| |||||||||||| |||||||| |||| |||||||||| |||||||| |
|
|
| T |
42125580 |
aactacatcctaacagtacccttttcaatcttgttcatcttcaaacactcaacctttctaacaatgatttctcttactctcattttcattctaagtttgg |
42125481 |
T |
|
| Q |
207 |
tgggtttttgagtctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcac |
301 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
42125480 |
tgggtttatgagtcttgcacatcttgacttgtctcgtagtttctttaaaggtgaaattccaattcaaatctcacacctttccaaattacaatcac |
42125386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 301
Target Start/End: Complemental strand, 42130905 - 42130611
Alignment:
| Q |
7 |
aaaaatgagactgattgctgctcatgggatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggta |
106 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||||||||||||| || |||||||||||||||| || ||||||||||||||||| ||| ||||| |
|
|
| T |
42130905 |
aaaaatgggactgattgctgctcatggaatggcgtcacgtgtgacacagtctctggtcacgtgattgacctcaaccttggctgtgaaggccttacaggta |
42130806 |
T |
|
| Q |
107 |
tattcagtcctaacagtacccttttccatcttgcttatattcaaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtttgg |
206 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||| | || | |||| |||||| |||||| ||||| |||||| || |||| ||||||||| |||||| | |
|
|
| T |
42130805 |
cattcaatcctaatagtaccctttttcatcttgttcatctccaaacactcaacctttcttacaatgatttctttgactctcattttcattataagttttg |
42130706 |
T |
|
| Q |
207 |
tgggtttttgagtctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcac |
301 |
Q |
| |
|
||| ||| |||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||| | |||||||||||||| |
|
|
| T |
42130705 |
tggatttcagagtcttacacatcttgacttgtctgatagtaacttagaaggtgaaattccaactcaaatctctcacctatccaaattacaatcac |
42130611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 41711709 - 41712003
Alignment:
| Q |
7 |
aaaaatgagactgattgctgctcatgggatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggta |
106 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||| ||||||||| || ||||| |||| ||| || |||||||||||||| || |||||||||| |
|
|
| T |
41711709 |
aaaaatgagactgattgttgctcatggcccggtgtcacatgtgacaccgtctatggtcgcgtggttggcctcaaccttggctgtgatggccttcaaggta |
41711808 |
T |
|
| Q |
107 |
tattcagtcctaacagtacccttttccatcttgcttatattcaaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtttgg |
206 |
Q |
| |
|
||||| |||||| | ||| ||||||||||||| | || | |||| |||||| |||||| ||||| |||||||| ||| |||||||||| |||||||| |
|
|
| T |
41711809 |
tattccatcctaataatactcttttccatcttgttcatctccaaacactcaacctttcttacaatgatttctcttactcccattttcattctaagtttgg |
41711908 |
T |
|
| Q |
207 |
tgggtttttgagtctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcac |
301 |
Q |
| |
|
| ||||||||||||| ||||||||||| ||||| ||||| |||| ||||||||||||||| ||||||||||||||| | |||||||||||||| |
|
|
| T |
41711909 |
tcggtttttgagtcttgcacatcttgacatgtcttatagttactttgaaggtgaaattccaattcaaatctcacacctctccaaattacaatcac |
41712003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 34230725 - 34231031
Alignment:
| Q |
7 |
aaaaatgagactgattgctgctcatgggatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggta |
106 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||| | |||||||||| |||| || ||||||||||||||||| ||||||||| |
|
|
| T |
34230725 |
aaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtcattggccttaaccttggctgtgaaggctttcaaggta |
34230824 |
T |
|
| Q |
107 |
tattcagtcctaacagtacccttttccatcttgcttatattcaaaaactcaatctttctaacaat------------aatttctctggctcttattttca |
194 |
Q |
| |
|
|| || |||||| ||||||||||||||||||||| | |||||| ||||| ||||| |||||| ||||||||||||| ||||||| |
|
|
| T |
34230825 |
tactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctttcgaacaattatttctctaacgatttctctggctcccattttca |
34230924 |
T |
|
| Q |
195 |
ttcaaagtttggtgggtttttgagtctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaatta |
294 |
Q |
| |
|
||| |||||||| |||||| ||||||| |||||||| ||||||||| | |||||||| ||| ||||||||| |||||||||| |||||| ||||||| |
|
|
| T |
34230925 |
ttctaagtttggcgggtttatgagtcttacacatctcgacttgtcttcttgtttctttcaagatgaaattccttctcaaatctcggacctttccaaatta |
34231024 |
T |
|
| Q |
295 |
caatcac |
301 |
Q |
| |
|
||||||| |
|
|
| T |
34231025 |
caatcac |
34231031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 34238780 - 34239074
Alignment:
| Q |
7 |
aaaaatgagactgattgctgctcatgggatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggta |
106 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||| | |||||||||| |||| || |||||||| |||||||| ||||||||| |
|
|
| T |
34238780 |
aaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtcattggccttaaccttggttgtgaaggctttcaaggta |
34238879 |
T |
|
| Q |
107 |
tattcagtcctaacagtacccttttccatcttgcttatattcaaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtttgg |
206 |
Q |
| |
|
|| || |||||| |||||||||||| || ||| | || | |||| |||||| |||||||||||| ||||| ||| || |||||| |||| |||||||| |
|
|
| T |
34238880 |
tactccatcctaatagtacccttttcaatattgttcatctccaaacactcaacctttctaacaatggtttctatggttcctattttgattctaagtttgg |
34238979 |
T |
|
| Q |
207 |
tgggtttttgagtctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcac |
301 |
Q |
| |
|
||||| |||||| |||||||||||||||||| || | || ||||||||||| ||||||||||| |||||| |||||||||||||| |
|
|
| T |
34238980 |
caggtttacgagtcttacacatcttgacttgtctaatactcatgttggcggtgaaattccttctcaaatctcatacctttccaaattacaatcac |
34239074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 42119082 - 42118787
Alignment:
| Q |
7 |
aaaaatgagactgattgctgctcat---gggatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaag |
103 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||| |||||| || || ||||||||||||||| || |||||||||| | || | ||| | |
|
|
| T |
42119082 |
aaaaatgggactgattgctgctcatcatggcatggtgtcgcgtgtgtcagagtctctggtcacgtgattggtctcaaccttggcttttaacgccttactg |
42118983 |
T |
|
| Q |
104 |
gtatattcagtcctaacagtacccttttccatcttgcttatattcaaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtt |
203 |
Q |
| |
|
||| ||| |||||||| ||||||||||||||||| | || | |||| ||| || ||| | |||||||||||| | ||| ||||||||| ||||| |
|
|
| T |
42118982 |
gtaaattacatcctaacaatacccttttccatcttgttcatctccaaacactaaaccttgcatccaataatttctccgcttctcgttttcattctaagtt |
42118883 |
T |
|
| Q |
204 |
tggtgggtttttgagtctcacacatcttgacttgtctcgtag-tttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaat |
298 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
42118882 |
tggtggttttttgagtcttacacatcttgacttgtctcatagttttctttaaaggtgaaattccaactcaaatctcacacttatccaaattacaat |
42118787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 41569939 - 41570172
Alignment:
| Q |
7 |
aaaaatgagactgattgctgctcatgggatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggta |
106 |
Q |
| |
|
|||| |||||| |||| || |||||| ||||||||||||| ||| | || |||||| |||||||| || |||||||||||||| | |||||||||| |
|
|
| T |
41569939 |
aaaattgagacaaattgttgttcatggcatggtgtcacgtgcgacgctgtctctggtcgcgtgattggtctcgaccttggctgtgaatgccttcaaggta |
41570038 |
T |
|
| Q |
107 |
tattcagtcctaacagtacccttttccatcttgcttatattcaaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtttgg |
206 |
Q |
| |
|
| | |||||||| || ||||| ||||||||| || | ||| |||||| |||||| ||||| |||||| ||| |||| ||||| ||||||| |
|
|
| T |
41570039 |
aaatttatcctaacaacactctttttcatcttgctcatctccaatcactcaacctttctcacaatgatttcttcaactccaatttgcattctcagtttgg |
41570138 |
T |
|
| Q |
207 |
tgggtttttgagtctcacacatcttgacttgtct |
240 |
Q |
| |
|
||| ||| |||||| |||||||||||||||||| |
|
|
| T |
41570139 |
tggatttaagagtcttacacatcttgacttgtct |
41570172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 37391642 - 37391694
Alignment:
| Q |
31 |
tgggatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaacct |
83 |
Q |
| |
|
||||||||||||||||| |||||||| | | |||||||||||||||| |||| |
|
|
| T |
37391642 |
tgggatggtgtcacgtgcgacaccatgtcagatcacgtgattgaactagacct |
37391694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 15 - 301
Target Start/End: Original strand, 25520953 - 25521239
Alignment:
| Q |
15 |
gactgattgctgctcatgggatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggtatattcagt |
114 |
Q |
| |
|
||||||||||||||||||| |||||||||| || ||||||| ||||| |||||||| || ||||||||||||||||| || |||||||||||| | |
|
|
| T |
25520953 |
gactgattgctgctcatggcatggtgtcacatgcgacaccacttttggtcgcgtgattggcctcaaccttggctgtgaaggcctccaaggtatattccat |
25521052 |
T |
|
| Q |
115 |
cctaacagtacccttttccatcttgcttatattcaaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtttggtgggtttt |
214 |
Q |
| |
|
||||| ||||| ||||||||||||||| |||||||||||||||| |||||| ||||| ||||| ||||||| |||||||| | ||||||||||||||| |
|
|
| T |
25521053 |
cctaatagtactcttttccatcttgctcatattcaaaaactcaacctttcttacaatgatttcactggctcccattttcatgctaagtttggtgggtttc |
25521152 |
T |
|
| Q |
215 |
tgagtctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcac |
301 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25521153 |
agagtcttacacatctttacttgtctggtagtttctttaaaggtaaaattccaactcaaatctcacacctttccaaattacaatcac |
25521239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 7 - 299
Target Start/End: Complemental strand, 11120454 - 11120162
Alignment:
| Q |
7 |
aaaaatgagactgattgctgctcatgggatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggta |
106 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||| ||||||||| |||||| |||||||| || || ||||||||||||||||||||||| | |
|
|
| T |
11120454 |
aaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaaggtcttcaaggca |
11120355 |
T |
|
| Q |
107 |
tattcagtcctaacagtacccttttccatcttgcttatattcaaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtttgg |
206 |
Q |
| |
|
|||| ||| || ||||||||||||||||||| | || | |||| |||||| ||| ||||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
11120354 |
tattacatccgaatagtacccttttccatcttgttcatctccaaacactcaaccttgtatacaataatttctccggctctcgttttcattctaagtttgg |
11120255 |
T |
|
| Q |
207 |
tgggtttttgagtctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatc |
299 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||| |||| | || | |||||||||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
11120254 |
tgggtttcagagtcttacacatctttacttgtcttatagtaacatttatggtgaaattccaactcaaatctcatatctttccaaattacaatc |
11120162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 12250500 - 12250207
Alignment:
| Q |
8 |
aaaatgagactgattgctgctcatgggatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggtat |
107 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||| |||||||| ||| |||||| ||||||| || |||||||| |||||| ||| | ||||| |
|
|
| T |
12250500 |
aaaatgggactgattgctgctcatggcatggtgtcacatgtgacacaatctatggtcatgtgattggcctcgaccttggcgatgaaggccttgatggtat |
12250401 |
T |
|
| Q |
108 |
attcagtcctaacagtacccttttccatcttgcttatattcaaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtttggt |
207 |
Q |
| |
|
||| ||||| |||||||||||| |||||||| || | |||| |||||| |||||| |||| ||||||| ||| |||||||||| ||||||||| |
|
|
| T |
12250400 |
attacaacctaatagtacccttttcgatcttgctcatctccaaacactcaacctttcttccaatgatttctcaaactcccattttcattctaagtttggt |
12250301 |
T |
|
| Q |
208 |
gggtttttgagtctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcac |
301 |
Q |
| |
|
|| || || | ||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
12250300 |
ggattctttaatcttacacatcttgacttgtctaatagtttctttaaaggtgaagttccaactcaaatctcacacctttccaaattagaatcac |
12250207 |
T |
|
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